Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13825

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
2,649,900	+		LU632_RS13820	0.16	-2.3
2,649,947	-		LU632_RS13820	0.22	-3.0
2,649,979	+		LU632_RS13820	0.25	+2.9
2,650,014	+		LU632_RS13820	0.29	-0.3
2,650,014	-		LU632_RS13820	0.29	+1.0
2,650,017	+		LU632_RS13820	0.30	-0.0
2,650,108	-		LU632_RS13820	0.40	-4.4
2,650,144	-		LU632_RS13820	0.44	-0.8
2,650,166	-		LU632_RS13820	0.47	+1.2
2,650,212	+		LU632_RS13820	0.52	+0.3
2,650,252	+		LU632_RS13820	0.56	+0.2
2,650,252	+		LU632_RS13820	0.56	+0.2
2,650,253	-		LU632_RS13820	0.56	+0.3
2,650,255	-		LU632_RS13820	0.57	-1.7
2,650,259	-		LU632_RS13820	0.57	-1.5
2,650,456	-		LU632_RS13820	0.79	+0.4
2,650,461	+		LU632_RS13820	0.80	+0.2
2,650,462	-		LU632_RS13820	0.80	-1.1
2,650,507	-		LU632_RS13820	0.85	+0.8
2,650,593	+				-0.7
2,650,621	+				-0.5
2,650,636	+				-0.4
2,650,636	+				-0.5
2,650,637	-				-2.2
2,650,687	+				-0.8
2,650,688	-				-1.5
2,650,771	+				-0.7
2,650,804	+				+2.2
2,650,804	+				+0.2
2,650,805	-				+0.3
2,650,879	-				+1.4
2,650,879	-				+1.0
2,651,112	+				+0.6
2,651,137	+				-0.3
2,651,213	+				-0.3
2,651,250	+		LU632_RS13825	0.11	+0.5
2,651,250	+		LU632_RS13825	0.11	-0.8
2,651,251	-		LU632_RS13825	0.11	+2.6
2,651,305	+		LU632_RS13825	0.12	-0.6
2,651,441	-		LU632_RS13825	0.16	-1.2
2,651,467	+		LU632_RS13825	0.17	-1.1
2,651,551	+		LU632_RS13825	0.19	+1.1
2,651,552	-		LU632_RS13825	0.19	-0.6
2,651,552	-		LU632_RS13825	0.19	-0.3
2,651,560	+		LU632_RS13825	0.19	+1.1
2,651,585	+		LU632_RS13825	0.20	-2.2
2,651,602	+		LU632_RS13825	0.21	-0.6
2,651,603	-		LU632_RS13825	0.21	+0.5
2,651,603	-		LU632_RS13825	0.21	+1.0
2,651,604	+		LU632_RS13825	0.21	+1.1
2,651,604	+		LU632_RS13825	0.21	-1.2
2,651,604	+		LU632_RS13825	0.21	+0.1
2,651,605	-		LU632_RS13825	0.21	-2.9
2,651,605	-		LU632_RS13825	0.21	-1.8
2,651,620	-		LU632_RS13825	0.21	+0.5
2,651,696	-		LU632_RS13825	0.23	-0.4
2,651,735	-		LU632_RS13825	0.24	-0.5
2,651,751	+		LU632_RS13825	0.25	-2.5
2,651,785	+		LU632_RS13825	0.26	-0.7
2,651,807	-		LU632_RS13825	0.26	-2.0
2,651,851	+		LU632_RS13825	0.28	+2.2
2,651,852	-		LU632_RS13825	0.28	-0.6
2,652,014	+		LU632_RS13825	0.32	+0.0
2,652,147	+		LU632_RS13825	0.36	-0.3
2,652,148	-		LU632_RS13825	0.36	-0.0
2,652,231	+		LU632_RS13825	0.38	+0.7
2,652,261	+		LU632_RS13825	0.39	+1.9
2,652,468	+		LU632_RS13825	0.45	+0.1
2,652,469	-		LU632_RS13825	0.45	-0.0
2,652,499	+		LU632_RS13825	0.46	-0.8
2,652,545	-		LU632_RS13825	0.47	+2.2
2,652,572	-		LU632_RS13825	0.48	-0.1
2,652,638	-		LU632_RS13825	0.50	-1.9
2,652,738	+		LU632_RS13825	0.53	-0.1
2,652,738	+		LU632_RS13825	0.53	-0.7
2,652,887	-		LU632_RS13825	0.57	-0.8
2,652,932	-		LU632_RS13825	0.58	-0.1
2,653,165	+		LU632_RS13825	0.65	-0.6
2,653,353	-		LU632_RS13825	0.70	-1.0
2,653,385	-		LU632_RS13825	0.71	-2.2
2,653,584	+		LU632_RS13825	0.77	+0.1
2,653,584	+		LU632_RS13825	0.77	+0.3
2,653,585	-		LU632_RS13825	0.77	+0.3
2,653,585	-		LU632_RS13825	0.77	+0.1
2,653,585	-		LU632_RS13825	0.77	-0.4
2,653,585	-		LU632_RS13825	0.77	-0.5
2,653,585	-		LU632_RS13825	0.77	+2.6
2,653,586	+		LU632_RS13825	0.77	-1.3
2,653,587	-		LU632_RS13825	0.77	+1.4
2,653,742	-		LU632_RS13825	0.81	-0.5
2,653,921	+		LU632_RS13825	0.86	+2.2
2,653,929	-		LU632_RS13825	0.87	+0.6
2,653,947	-		LU632_RS13825	0.87	+0.2
2,653,970	+		LU632_RS13825	0.88	-0.2
2,653,970	+		LU632_RS13825	0.88	+3.7
2,654,075	-				+0.0
2,654,075	-				-0.2
2,654,149	-				+2.6
2,654,149	-				+2.3
2,654,149	-				+0.2
2,654,149	-				+0.3
2,654,209	+				-4.4
2,654,209	+				+2.0
2,654,210	-				-1.2
2,654,213	+				+1.5
2,654,213	+				-0.6
2,654,213	+				-1.0
2,654,214	-				-0.2
2,654,214	-				-0.1
2,654,313	+				-0.2
2,654,313	+				-0.6
2,654,313	+				-1.6
2,654,314	-				-0.4
2,654,352	+				-1.2
2,654,353	-				+0.0
2,654,375	-				-2.4
2,654,472	+		LU632_RS13830	0.48	+1.1
2,654,473	-		LU632_RS13830	0.49	-2.1
2,654,516	+		LU632_RS13830	0.78	+0.0
2,654,551	+				+0.5
2,654,602	-				+0.1
2,654,657	-				-0.9
2,654,759	+				-1.5
2,654,793	-				-1.0
2,654,942	+				-2.7
2,655,006	+				+1.4
2,655,007	-				+0.3
2,655,127	-		LU632_RS13835	0.14	+1.9
2,655,174	+		LU632_RS13835	0.18	+2.0
2,655,175	-		LU632_RS13835	0.18	-1.1
2,655,229	-		LU632_RS13835	0.22	+1.0
2,655,237	-		LU632_RS13835	0.23	-1.5
2,655,349	+		LU632_RS13835	0.32	+1.5