Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12385

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
2,353,787	-		LU632_RS12380	0.53	+1.0
2,353,883	-		LU632_RS12380	0.63	-0.3
2,353,950	-		LU632_RS12380	0.70	+1.0
2,354,063	+		LU632_RS12380	0.82	-1.7
2,354,064	-		LU632_RS12380	0.82	-1.3
2,354,064	-		LU632_RS12380	0.82	-1.3
2,354,160	-				+0.4
2,354,216	+				-0.6
2,354,262	+				-0.2
2,354,279	+				-0.8
2,354,291	+				-0.2
2,354,291	+				-0.4
2,354,291	+				-0.8
2,354,361	+				-0.2
2,354,471	+				-0.7
2,354,472	-				-0.2
2,354,564	+				+0.8
2,354,577	+				+0.3
2,354,577	+				-0.2
2,354,581	+				+0.5
2,354,640	-				-1.4
2,354,709	-		LU632_RS12385	0.10	-0.7
2,354,777	-		LU632_RS12385	0.27	+0.8
2,354,777	-		LU632_RS12385	0.27	-0.8
2,354,806	+		LU632_RS12385	0.34	-0.9
2,354,808	+		LU632_RS12385	0.34	+0.5
2,354,883	-		LU632_RS12385	0.52	+0.7
2,355,099	+				-0.7
2,355,293	-				+0.7
2,355,314	+				-0.6
2,355,314	+				-1.8
2,355,315	-				+0.4
2,355,315	-				-0.5
2,355,337	-				-0.6
2,355,383	-				+2.1
2,355,404	+				+1.3
2,355,404	+				+0.5
2,355,405	-				+0.8
2,355,405	-				-1.3
2,355,444	+				-0.0
2,355,495	+				+0.7
2,355,499	+				-3.3