Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12330

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
2,341,864	-				-1.7
2,341,885	+				+1.7
2,341,894	-				-0.0
2,342,333	+				+0.2
2,342,360	+				-0.1
2,342,418	-		LU632_RS12325	0.21	+0.4
2,342,540	+		LU632_RS12325	0.51	-0.3
2,342,625	+		LU632_RS12325	0.72	-0.9
2,342,699	+				-1.5
2,342,700	-				+1.1
2,342,700	-				-2.2
2,342,700	-				-3.2
2,343,493	-	tus	LU632_RS12330	0.68	+1.7
2,343,705	+				+0.3
2,343,780	+				+1.0
2,343,813	-				+0.4
2,343,840	-				+1.8
2,343,992	+	fumC	LU632_RS12335	0.10	+1.2
2,344,004	+	fumC	LU632_RS12335	0.11	-0.7
2,344,005	-	fumC	LU632_RS12335	0.11	-1.4
2,344,015	-	fumC	LU632_RS12335	0.12	-1.6
2,344,131	+	fumC	LU632_RS12335	0.20	-2.2
2,344,205	+	fumC	LU632_RS12335	0.25	-2.1
2,344,289	+	fumC	LU632_RS12335	0.31	+1.2
2,344,289	+	fumC	LU632_RS12335	0.31	+2.3
2,344,373	+	fumC	LU632_RS12335	0.37	-1.8
2,344,377	+	fumC	LU632_RS12335	0.38	+1.6
2,344,377	+	fumC	LU632_RS12335	0.38	+2.8
2,344,426	-	fumC	LU632_RS12335	0.41	+0.7
2,344,426	-	fumC	LU632_RS12335	0.41	-0.0
2,344,426	-	fumC	LU632_RS12335	0.41	+0.8
2,344,464	-	fumC	LU632_RS12335	0.44	-1.0
2,344,607	+	fumC	LU632_RS12335	0.54	+0.5