Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11920

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
2,256,572	+				+0.6
2,257,293	-				+0.5
2,258,220	-		LU632_RS11925	0.35	+1.5
2,258,249	+		LU632_RS11925	0.45	+0.5
2,258,250	-		LU632_RS11925	0.45	+0.5
2,258,317	-		LU632_RS11925	0.69	-2.5
2,258,317	-		LU632_RS11925	0.69	-0.2
2,258,646	+		LU632_RS11935	0.16	+0.9
2,258,646	+		LU632_RS11935	0.16	+0.4
2,258,647	-		LU632_RS11935	0.16	+0.4
2,258,647	-		LU632_RS11935	0.16	-2.1
2,258,647	-		LU632_RS11935	0.16	-0.9
2,258,647	-		LU632_RS11935	0.16	+3.7
2,258,665	-		LU632_RS11935	0.22	-0.2
2,258,748	+		LU632_RS11935	0.50	+0.6
2,258,748	+		LU632_RS11935	0.50	-3.3
2,258,749	-		LU632_RS11935	0.50	+0.4
2,258,749	-		LU632_RS11935	0.50	+0.2
2,258,847	-		LU632_RS11935	0.83	-0.7
2,258,847	-		LU632_RS11935	0.83	-0.3
2,258,848	+		LU632_RS11935	0.83	-0.8
2,258,848	+		LU632_RS11935	0.83	+1.1
2,258,848	+		LU632_RS11935	0.83	+2.0
2,258,849	-		LU632_RS11935	0.83	+1.2
2,258,927	-				-1.2
2,258,927	-				-0.8
2,258,927	-				+1.0
2,258,930	-				+1.1
2,258,950	+				+0.9
2,258,964	-				+1.6