Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11220

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
2,145,662	+				+0.9
2,145,663	-				+0.4
2,145,667	-				-2.5
2,145,742	-				-0.5
2,145,754	-				-1.6
2,145,817	+				-0.2
2,145,908	+				+0.5
2,145,909	-				-0.9
2,145,917	+				-0.3
2,145,976	+				+1.2
2,146,334	-				+0.8
2,146,355	-				-0.8
2,146,447	-				+0.1
2,146,466	+				+0.1
2,146,466	+				+0.0
2,146,466	+				-1.3
2,146,467	-				+0.1
2,146,467	-				+2.0
2,146,467	-				+0.6
2,146,576	+				-0.9
2,146,577	-				-1.4
2,146,598	+				+0.5
2,146,726	+	rnt	LU632_RS11220	0.14	+0.7
2,146,811	+	rnt	LU632_RS11220	0.27	-1.9
2,146,812	-	rnt	LU632_RS11220	0.27	-0.2
2,146,812	-	rnt	LU632_RS11220	0.27	+0.4
2,146,812	-	rnt	LU632_RS11220	0.27	-0.4
2,146,990	+	rnt	LU632_RS11220	0.55	+0.4
2,146,990	+	rnt	LU632_RS11220	0.55	-0.3
2,146,990	+	rnt	LU632_RS11220	0.55	-2.8
2,146,991	-	rnt	LU632_RS11220	0.55	-3.1
2,146,991	-	rnt	LU632_RS11220	0.55	+1.6
2,146,991	-	rnt	LU632_RS11220	0.55	+0.4
2,146,991	-	rnt	LU632_RS11220	0.55	-2.8
2,147,015	+	rnt	LU632_RS11220	0.59	+0.8
2,147,028	-	rnt	LU632_RS11220	0.61	-0.5
2,147,036	-	rnt	LU632_RS11220	0.62	-2.9
2,147,075	+	rnt	LU632_RS11220	0.68	+0.5
2,147,398	+				+1.6
2,147,398	+				-0.3
2,147,399	-				-0.1
2,147,399	-				-0.8
2,147,437	+	gloA	LU632_RS11225	0.12	+0.6
2,147,438	-	gloA	LU632_RS11225	0.12	-0.6
2,147,598	+	gloA	LU632_RS11225	0.52	+1.1
2,147,598	+	gloA	LU632_RS11225	0.52	+0.5
2,147,599	-	gloA	LU632_RS11225	0.52	+0.0
2,147,599	-	gloA	LU632_RS11225	0.52	-0.8
2,147,599	-	gloA	LU632_RS11225	0.52	+0.8
2,147,603	-	gloA	LU632_RS11225	0.53	+1.2
2,147,657	-	gloA	LU632_RS11225	0.66	+2.0
2,147,679	+	gloA	LU632_RS11225	0.72	+1.0
2,147,680	-	gloA	LU632_RS11225	0.72	-3.5
2,147,683	+	gloA	LU632_RS11225	0.73	-0.3
2,147,683	+	gloA	LU632_RS11225	0.73	+0.0
2,147,684	-	gloA	LU632_RS11225	0.73	+0.1
2,147,684	-	gloA	LU632_RS11225	0.73	+2.0
2,147,684	-	gloA	LU632_RS11225	0.73	-2.2
2,147,684	-	gloA	LU632_RS11225	0.73	-1.6
2,147,684	-	gloA	LU632_RS11225	0.73	-2.1
2,147,686	-	gloA	LU632_RS11225	0.73	+1.6
2,147,756	+				-1.3
2,147,780	-				-1.1
2,147,780	-				+0.5
2,147,795	-				+1.7
2,147,795	-				-0.8
2,147,843	+				+2.5
2,147,844	-				+1.2
2,147,865	-				-0.3
2,147,879	-				+0.3
2,147,883	-				-0.9
2,147,886	+				+2.0
2,147,886	+				+0.5
2,147,886	+				-0.6
2,147,970	+		LU632_RS11230	0.18	+0.4
2,147,972	+		LU632_RS11230	0.19	-1.6
2,147,972	+		LU632_RS11230	0.19	-0.3
2,147,972	+		LU632_RS11230	0.19	-0.8
2,148,008	+		LU632_RS11230	0.26	-0.9
2,148,008	+		LU632_RS11230	0.26	+0.4
2,148,008	+		LU632_RS11230	0.26	-0.3
2,148,008	+		LU632_RS11230	0.26	-1.4
2,148,008	+		LU632_RS11230	0.26	-1.9
2,148,008	+		LU632_RS11230	0.26	-0.7
2,148,008	+		LU632_RS11230	0.26	-0.1
2,148,009	-		LU632_RS11230	0.27	+0.3
2,148,009	-		LU632_RS11230	0.27	+1.0
2,148,144	-		LU632_RS11230	0.54	+1.8
2,148,180	-		LU632_RS11230	0.62	+0.4
2,148,180	-		LU632_RS11230	0.62	+0.4
2,148,181	+		LU632_RS11230	0.62	-1.1
2,148,182	-		LU632_RS11230	0.62	-1.6
2,148,185	+		LU632_RS11230	0.63	+0.0
2,148,186	-		LU632_RS11230	0.63	-2.0
2,148,218	+		LU632_RS11230	0.70	-0.6
2,148,218	+		LU632_RS11230	0.70	+0.3
2,148,264	+		LU632_RS11230	0.79	-0.3
2,148,264	+		LU632_RS11230	0.79	+1.4
2,148,264	+		LU632_RS11230	0.79	+1.5
2,148,264	+		LU632_RS11230	0.79	-2.2
2,148,265	-		LU632_RS11230	0.80	+0.7
2,148,265	-		LU632_RS11230	0.80	-0.8
2,148,274	-		LU632_RS11230	0.81	+0.1