Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10985

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
2,095,883	-		LU632_RS10980	0.41	+1.0
2,095,982	-		LU632_RS10980	0.48	-0.8
2,096,028	+		LU632_RS10980	0.51	-3.0
2,096,028	+		LU632_RS10980	0.51	-1.8
2,096,029	-		LU632_RS10980	0.51	-1.2
2,096,029	-		LU632_RS10980	0.51	+0.4
2,096,057	-		LU632_RS10980	0.53	+0.1
2,096,169	+		LU632_RS10980	0.61	-2.5
2,096,169	+		LU632_RS10980	0.61	-0.9
2,096,170	-		LU632_RS10980	0.61	-0.4
2,096,365	+		LU632_RS10980	0.75	-0.0
2,096,367	+		LU632_RS10980	0.75	+0.7
2,096,394	+		LU632_RS10980	0.77	-2.3
2,096,395	-		LU632_RS10980	0.77	-1.1
2,096,436	+		LU632_RS10980	0.80	-0.1
2,096,564	-		LU632_RS10980	0.88	+0.1
2,096,604	+				-1.5
2,096,605	-				-2.1
2,096,607	+				+1.7
2,096,608	-				-0.3
2,096,608	-				+1.0
2,096,608	-				+0.9
2,096,608	-				-1.9
2,096,743	-				+0.8
2,096,779	+				-1.4
2,096,822	+		LU632_RS10985	0.16	+0.5
2,096,836	+		LU632_RS10985	0.19	-0.2
2,096,852	+		LU632_RS10985	0.23	-0.1
2,096,852	+		LU632_RS10985	0.23	-3.0
2,096,853	-		LU632_RS10985	0.24	-0.2
2,096,914	-		LU632_RS10985	0.39	-0.3
2,097,058	+		LU632_RS10985	0.76	+0.5
2,097,059	-		LU632_RS10985	0.77	-0.2
2,097,120	-				+0.4
2,097,149	+				+0.8
2,097,149	+				-0.1
2,097,150	-				+3.2
2,097,150	-				-1.8
2,097,150	-				-2.7
2,097,189	-				-2.0
2,097,351	-				+0.2
2,097,400	+				+2.7
2,097,405	+				-1.1
2,097,405	+				+2.6
2,097,405	+				+0.3
2,097,405	+				+1.0
2,097,430	-				+2.8
2,097,432	+		LU632_RS10990	0.10	+2.7
2,097,432	+		LU632_RS10990	0.10	+2.3
2,097,432	+		LU632_RS10990	0.10	+3.4
2,097,433	-		LU632_RS10990	0.10	+1.5
2,097,519	+		LU632_RS10990	0.15	+2.2
2,097,531	-		LU632_RS10990	0.16	+1.0
2,097,751	+		LU632_RS10990	0.28	+1.7
2,097,752	-		LU632_RS10990	0.28	+1.7
2,097,806	-		LU632_RS10990	0.31	+3.2
2,097,914	-		LU632_RS10990	0.37	+0.0
2,097,978	-		LU632_RS10990	0.41	+1.9
2,098,063	-		LU632_RS10990	0.45	+2.3
2,098,063	-		LU632_RS10990	0.45	+0.7
2,098,127	-		LU632_RS10990	0.49	+1.3