Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10125

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
1,934,576	+	agp	LU632_RS10120	0.38	-0.2
1,934,577	-	agp	LU632_RS10120	0.38	-0.4
1,934,596	+	agp	LU632_RS10120	0.39	-1.4
1,934,597	-	agp	LU632_RS10120	0.39	-0.1
1,934,597	-	agp	LU632_RS10120	0.39	+0.8
1,934,597	-	agp	LU632_RS10120	0.39	-0.5
1,934,717	-	agp	LU632_RS10120	0.47	-0.6
1,934,717	-	agp	LU632_RS10120	0.47	-0.2
1,934,729	+	agp	LU632_RS10120	0.48	+0.3
1,934,729	+	agp	LU632_RS10120	0.48	+1.8
1,934,729	+	agp	LU632_RS10120	0.48	-0.2
1,934,803	+	agp	LU632_RS10120	0.53	-0.1
1,934,804	-	agp	LU632_RS10120	0.53	+0.4
1,935,095	+	agp	LU632_RS10120	0.73	+0.9
1,935,095	+	agp	LU632_RS10120	0.73	+0.9
1,935,095	+	agp	LU632_RS10120	0.73	-1.4
1,935,095	+	agp	LU632_RS10120	0.73	-0.1
1,935,096	-	agp	LU632_RS10120	0.73	+0.7
1,935,096	-	agp	LU632_RS10120	0.73	-0.1
1,935,096	-	agp	LU632_RS10120	0.73	+3.3
1,935,096	-	agp	LU632_RS10120	0.73	+0.8
1,935,101	+	agp	LU632_RS10120	0.73	-1.0
1,935,121	-	agp	LU632_RS10120	0.75	-0.3
1,935,121	-	agp	LU632_RS10120	0.75	+0.9
1,935,125	-	agp	LU632_RS10120	0.75	+0.8
1,935,125	-	agp	LU632_RS10120	0.75	-2.7
1,935,227	-	agp	LU632_RS10120	0.82	+0.2
1,935,290	-	agp	LU632_RS10120	0.86	+3.1
1,935,487	+				+1.0
1,935,646	+				-0.9
1,935,646	+				+1.7
1,935,676	+				-2.7
1,935,803	+		LU632_RS10125	0.18	+1.0
1,935,828	+		LU632_RS10125	0.20	-0.5
1,935,828	+		LU632_RS10125	0.20	-0.4
1,935,829	-		LU632_RS10125	0.20	+1.1
1,935,875	-		LU632_RS10125	0.23	-0.2
1,936,082	+		LU632_RS10125	0.38	+1.8
1,936,162	+		LU632_RS10125	0.44	+0.5
1,936,229	+		LU632_RS10125	0.49	-1.5
1,936,229	+		LU632_RS10125	0.49	-2.5
1,936,229	+		LU632_RS10125	0.49	+1.1
1,936,230	-		LU632_RS10125	0.49	-0.0
1,936,230	-		LU632_RS10125	0.49	+0.8
1,936,230	-		LU632_RS10125	0.49	-0.4
1,936,230	-		LU632_RS10125	0.49	-0.8
1,936,230	-		LU632_RS10125	0.49	+0.7
1,936,270	-		LU632_RS10125	0.52	+2.2
1,936,297	+		LU632_RS10125	0.54	-1.0
1,936,378	+		LU632_RS10125	0.60	+0.2
1,936,521	-		LU632_RS10125	0.70	-0.3
1,936,650	+		LU632_RS10125	0.79	+0.5
1,936,718	+		LU632_RS10125	0.84	-2.1
1,936,810	+				-1.0
1,936,810	+				-3.1
1,936,811	-				-0.7
1,936,811	-				-1.0
1,936,828	-				-0.2
1,936,847	+				-1.2
1,936,891	+				+2.6
1,936,993	+				+0.7
1,936,993	+				-0.2
1,936,998	-				+2.2
1,936,998	-				-0.6
1,937,000	+				-1.4
1,937,000	+				+0.5
1,937,084	-				+1.5
1,937,134	-				+0.2
1,937,228	+				+0.9
1,937,229	-				+0.5
1,937,229	-				+0.3
1,937,229	-				-1.4
1,937,232	+				+0.3
1,937,252	+				-1.0
1,937,252	+				-1.0
1,937,253	-				-1.5
1,937,253	-				+0.7
1,937,254	+				-0.8
1,937,254	+				+0.1
1,937,254	+				+1.4
1,937,255	-				+0.2
1,937,255	-				+0.3
1,937,255	-				+0.2
1,937,260	+				-2.0
1,937,261	-				-2.1
1,937,307	+				-1.2
1,937,307	+				-0.8
1,937,307	+				-0.7
1,937,308	-				-0.9
1,937,308	-				-2.2
1,937,308	-				+0.1
1,937,308	-				+0.8
1,937,349	-				-0.0
1,937,349	-				+1.0
1,937,360	+				+3.1
1,937,362	+				-2.8
1,937,362	+				+0.2
1,937,362	+				-1.4
1,937,363	-				-0.1
1,937,363	-				-0.2
1,937,399	+				-1.3
1,937,551	+				+0.8
1,937,556	+				+1.7
1,937,556	+				+0.3