Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09145

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
1,722,835	+				+0.8
1,722,835	+				+2.2
1,722,835	+				-0.1
1,722,835	+				+0.4
1,722,835	+				-0.1
1,722,835	+				-0.3
1,722,836	-				+3.4
1,722,836	-				+1.4
1,722,836	-				+2.8
1,722,836	-				+1.4
1,722,836	-				+1.2
1,722,836	-				-0.8
1,722,836	-				-1.5
1,722,836	-				-1.6
1,722,836	-				-0.1
1,722,836	-				+1.5
1,722,837	+				-0.0
1,722,837	+				-0.3
1,722,837	+				-2.7
1,722,838	-				+0.5
1,722,839	+				+0.1
1,722,840	-				+1.3
1,722,973	-				-1.6
1,722,977	-				+0.1
1,722,977	-				-0.5
1,722,980	+				+0.4
1,722,982	+				+0.8
1,722,982	+				+1.3
1,723,086	+		LU632_RS09150	0.13	+0.1
1,723,090	+		LU632_RS09150	0.14	-2.1
1,723,117	+		LU632_RS09150	0.21	+0.2
1,723,117	+		LU632_RS09150	0.21	-0.1
1,723,118	-		LU632_RS09150	0.21	-0.1
1,723,118	-		LU632_RS09150	0.21	-0.3
1,723,120	-		LU632_RS09150	0.22	+1.2
1,723,125	+		LU632_RS09150	0.23	-1.2
1,723,125	+		LU632_RS09150	0.23	+0.0
1,723,126	-		LU632_RS09150	0.23	-0.5
1,723,129	-		LU632_RS09150	0.24	+0.1
1,723,180	-		LU632_RS09150	0.37	+0.5
1,723,180	-		LU632_RS09150	0.37	-2.0
1,723,180	-		LU632_RS09150	0.37	-1.8
1,723,183	+		LU632_RS09150	0.38	-0.6
1,723,183	+		LU632_RS09150	0.38	+2.2
1,723,252	-		LU632_RS09150	0.55	+0.3
1,723,252	-		LU632_RS09150	0.55	-0.3
1,723,279	-		LU632_RS09150	0.62	-2.3
1,723,293	-		LU632_RS09150	0.66	+1.2
1,723,369	-		LU632_RS09150	0.85	+0.9
1,723,449	+				+1.4
1,723,478	+				-2.9
1,723,479	-				-1.8
1,723,479	-				+2.5
1,723,558	-				+0.4
1,723,584	+				-0.3
1,723,595	-				+2.7
1,723,613	+				-0.6
1,723,614	-				+0.7
1,723,616	-				-1.8
1,723,624	+				+0.6