Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08520

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
1,598,169	-	galS	LU632_RS08515	0.40	+1.0
1,598,218	+	galS	LU632_RS08515	0.45	+0.3
1,598,385	+	galS	LU632_RS08515	0.62	+1.5
1,598,386	-	galS	LU632_RS08515	0.62	+0.3
1,598,386	-	galS	LU632_RS08515	0.62	+1.0
1,598,386	-	galS	LU632_RS08515	0.62	+1.8
1,598,429	+	galS	LU632_RS08515	0.66	+1.2
1,598,430	-	galS	LU632_RS08515	0.66	+2.4
1,598,498	-	galS	LU632_RS08515	0.73	-0.2
1,598,643	+	galS	LU632_RS08515	0.88	+1.4
1,598,785	-				-0.4
1,598,977	+				-1.5
1,599,076	+				+0.8
1,599,084	+				+0.8
1,599,100	+				+1.2
1,599,100	+				+1.0
1,599,110	-				-1.5
1,599,157	+				-1.6
1,599,200	+				-0.8
1,599,202	+				+1.1
1,599,203	-				+3.8
1,599,203	-				-1.3
1,599,327	+	mglB	LU632_RS08520	0.22	-1.2
1,599,328	-	mglB	LU632_RS08520	0.22	+1.3
1,599,425	-	mglB	LU632_RS08520	0.32	+1.5
1,599,477	-	mglB	LU632_RS08520	0.37	+0.6
1,599,488	+	mglB	LU632_RS08520	0.39	-0.4
1,599,491	+	mglB	LU632_RS08520	0.39	+0.8
1,599,492	-	mglB	LU632_RS08520	0.39	-1.8
1,599,492	-	mglB	LU632_RS08520	0.39	+0.4
1,599,492	-	mglB	LU632_RS08520	0.39	+1.4
1,599,599	+	mglB	LU632_RS08520	0.50	+0.9
1,599,599	+	mglB	LU632_RS08520	0.50	+1.2
1,599,653	+	mglB	LU632_RS08520	0.55	-2.4
1,599,654	-	mglB	LU632_RS08520	0.55	+0.7
1,599,654	-	mglB	LU632_RS08520	0.55	+0.8
1,599,654	-	mglB	LU632_RS08520	0.55	-1.3
1,599,848	-	mglB	LU632_RS08520	0.75	-1.2
1,599,848	-	mglB	LU632_RS08520	0.75	+0.6
1,599,867	+	mglB	LU632_RS08520	0.77	+0.3
1,599,929	-	mglB	LU632_RS08520	0.83	-0.6
1,600,022	+				+4.6
1,600,022	+				-0.4
1,600,022	+				+0.3
1,600,041	+				+1.4
1,600,042	-				-0.8
1,600,044	+				+0.8
1,600,055	+				-1.2
1,600,098	-				-1.2
1,600,189	+				+0.8
1,600,372	+	mglA	LU632_RS08525	0.12	-0.9
1,600,372	+	mglA	LU632_RS08525	0.12	-0.2
1,600,375	-	mglA	LU632_RS08525	0.12	+1.0
1,600,375	-	mglA	LU632_RS08525	0.12	-1.4
1,600,376	+	mglA	LU632_RS08525	0.12	-0.1
1,600,377	-	mglA	LU632_RS08525	0.12	+0.4
1,600,479	+	mglA	LU632_RS08525	0.19	+2.1
1,600,479	+	mglA	LU632_RS08525	0.19	+0.6
1,600,756	+	mglA	LU632_RS08525	0.37	-2.1
1,600,759	+	mglA	LU632_RS08525	0.37	-2.4
1,600,800	-	mglA	LU632_RS08525	0.40	+1.3
1,600,906	+	mglA	LU632_RS08525	0.47	+0.4
1,600,992	+	mglA	LU632_RS08525	0.53	-0.0
1,600,993	-	mglA	LU632_RS08525	0.53	-1.7
1,600,993	-	mglA	LU632_RS08525	0.53	+0.2
1,601,024	-	mglA	LU632_RS08525	0.55	-0.2
1,601,032	+	mglA	LU632_RS08525	0.55	-3.4
1,601,032	+	mglA	LU632_RS08525	0.55	+0.5
1,601,033	-	mglA	LU632_RS08525	0.55	-0.1
1,601,033	-	mglA	LU632_RS08525	0.55	-0.3
1,601,034	+	mglA	LU632_RS08525	0.55	-0.1
1,601,035	-	mglA	LU632_RS08525	0.56	-0.5