Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08130 and LU632_RS08135 are separated by 371 nucleotides LU632_RS08135 and LU632_RS08140 are separated by 188 nucleotides LU632_RS08140 and yfaE are separated by 107 nucleotides
LU632_RS08130: LU632_RS08130 - nicotinamide mononucleotide deamidase-related protein YfaY, at 1,522,435 to 1,523,640
_RS08130
LU632_RS08135: LU632_RS08135 - IS1 family transposase, at 1,524,012 to 1,524,709
_RS08135
LU632_RS08140: LU632_RS08140 - hypothetical protein, at 1,524,898 to 1,525,392
_RS08140
LU632_RS08145: yfaE - class I ribonucleotide reductase maintenance protein YfaE, at 1,525,500 to 1,525,760
yfaE
Position (kb) 1524
1525 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1523.322 kb on + strand, within LU632_RS08130 at 1523.322 kb on + strand, within LU632_RS08130 at 1523.323 kb on - strand, within LU632_RS08130 at 1523.323 kb on - strand, within LU632_RS08130 at 1523.323 kb on - strand, within LU632_RS08130 at 1523.550 kb on + strand at 1523.718 kb on + strand at 1523.728 kb on + strand at 1523.747 kb on + strand at 1523.747 kb on + strand at 1523.747 kb on + strand at 1523.759 kb on + strand at 1523.760 kb on - strand at 1523.760 kb on - strand at 1523.786 kb on - strand at 1523.786 kb on - strand at 1523.816 kb on + strand at 1523.817 kb on - strand at 1523.862 kb on + strand at 1523.862 kb on + strand at 1523.863 kb on - strand at 1523.863 kb on - strand at 1523.863 kb on - strand at 1523.863 kb on - strand at 1523.899 kb on + strand at 1523.899 kb on + strand at 1523.900 kb on - strand at 1523.900 kb on - strand at 1523.929 kb on + strand at 1523.951 kb on + strand at 1523.952 kb on - strand at 1523.987 kb on - strand at 1524.100 kb on - strand, within LU632_RS08135 at 1524.100 kb on - strand, within LU632_RS08135 at 1524.844 kb on - strand at 1524.909 kb on + strand at 1524.962 kb on + strand, within LU632_RS08140 at 1525.005 kb on + strand, within LU632_RS08140 at 1525.058 kb on + strand, within LU632_RS08140 at 1525.137 kb on + strand, within LU632_RS08140 at 1525.145 kb on + strand, within LU632_RS08140 at 1525.152 kb on - strand, within LU632_RS08140 at 1525.224 kb on + strand, within LU632_RS08140 at 1525.238 kb on + strand, within LU632_RS08140 at 1525.403 kb on + strand at 1525.404 kb on - strand at 1525.433 kb on + strand at 1525.433 kb on + strand at 1525.433 kb on + strand at 1525.434 kb on - strand at 1525.434 kb on - strand at 1525.434 kb on - strand at 1525.501 kb on + strand at 1525.588 kb on + strand, within yfaE at 1525.633 kb on + strand, within yfaE at 1525.652 kb on - strand, within yfaE
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 1,523,322 + LU632_RS08130 0.74 -2.0 1,523,322 + LU632_RS08130 0.74 +0.5 1,523,323 - LU632_RS08130 0.74 -0.1 1,523,323 - LU632_RS08130 0.74 +0.8 1,523,323 - LU632_RS08130 0.74 +2.0 1,523,550 + +0.5 1,523,718 + +1.0 1,523,728 + +2.1 1,523,747 + -0.2 1,523,747 + -1.8 1,523,747 + -1.1 1,523,759 + +0.5 1,523,760 - +1.7 1,523,760 - +0.1 1,523,786 - -1.3 1,523,786 - -1.4 1,523,816 + +0.5 1,523,817 - -0.7 1,523,862 + -0.2 1,523,862 + +0.3 1,523,863 - +1.0 1,523,863 - -1.0 1,523,863 - +2.4 1,523,863 - -0.5 1,523,899 + +1.9 1,523,899 + +0.7 1,523,900 - +0.3 1,523,900 - +0.0 1,523,929 + -0.4 1,523,951 + -1.0 1,523,952 - -1.0 1,523,987 - +0.8 1,524,100 - LU632_RS08135 0.13 +2.7 1,524,100 - LU632_RS08135 0.13 +0.6 1,524,844 - -0.1 1,524,909 + +1.0 1,524,962 + LU632_RS08140 0.13 -0.1 1,525,005 + LU632_RS08140 0.22 +0.5 1,525,058 + LU632_RS08140 0.32 +0.6 1,525,137 + LU632_RS08140 0.48 -1.5 1,525,145 + LU632_RS08140 0.50 -0.3 1,525,152 - LU632_RS08140 0.51 +2.0 1,525,224 + LU632_RS08140 0.66 -1.3 1,525,238 + LU632_RS08140 0.69 -0.8 1,525,403 + +0.1 1,525,404 - +2.6 1,525,433 + -2.3 1,525,433 + -0.4 1,525,433 + +1.0 1,525,434 - +1.0 1,525,434 - -0.3 1,525,434 - -1.1 1,525,501 + +0.4 1,525,588 + yfaE LU632_RS08145 0.34 -1.4 1,525,633 + yfaE LU632_RS08145 0.51 -1.1 1,525,652 - yfaE LU632_RS08145 0.58 -1.5
Or see this region's nucleotide sequence