Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07885

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
1,472,236	+		LU632_RS07880	0.17	+0.7
1,472,289	+		LU632_RS07880	0.23	-1.3
1,472,289	+		LU632_RS07880	0.23	-0.1
1,472,289	+		LU632_RS07880	0.23	-0.4
1,472,289	+		LU632_RS07880	0.23	-1.7
1,472,290	-		LU632_RS07880	0.23	-1.2
1,472,293	+		LU632_RS07880	0.23	-1.2
1,472,293	+		LU632_RS07880	0.23	-0.4
1,472,294	-		LU632_RS07880	0.23	-0.2
1,472,294	-		LU632_RS07880	0.23	-1.0
1,472,299	-		LU632_RS07880	0.24	+3.3
1,472,341	-		LU632_RS07880	0.29	-0.6
1,472,379	+		LU632_RS07880	0.33	-0.5
1,472,396	+		LU632_RS07880	0.35	+0.1
1,472,396	+		LU632_RS07880	0.35	+0.7
1,472,397	-		LU632_RS07880	0.35	-0.7
1,472,397	-		LU632_RS07880	0.35	+0.2
1,472,497	+		LU632_RS07880	0.46	-0.1
1,472,627	+		LU632_RS07880	0.61	+1.0
1,472,628	-		LU632_RS07880	0.61	-2.2
1,472,630	+		LU632_RS07880	0.61	+0.2
1,472,653	-		LU632_RS07880	0.63	+0.0
1,472,682	+		LU632_RS07880	0.67	-1.8
1,472,682	+		LU632_RS07880	0.67	-0.8
1,472,683	-		LU632_RS07880	0.67	-0.4
1,472,683	-		LU632_RS07880	0.67	+0.5
1,472,687	-		LU632_RS07880	0.67	+2.4
1,472,788	-		LU632_RS07880	0.79	-1.1
1,472,802	+		LU632_RS07880	0.80	-2.4
1,472,803	-		LU632_RS07880	0.80	-0.4
1,472,809	+		LU632_RS07880	0.81	+0.1
1,472,810	-		LU632_RS07880	0.81	+0.1
1,472,973	+				+5.1
1,472,974	-				+1.0
1,473,121	+				-1.4
1,473,122	-				-0.5
1,473,224	-				+0.8
1,473,224	-				-0.3
1,473,258	-				-0.7
1,473,363	+	yfcF	LU632_RS07885	0.24	-2.8
1,473,363	+	yfcF	LU632_RS07885	0.24	+0.9
1,473,363	+	yfcF	LU632_RS07885	0.24	-0.1
1,473,363	+	yfcF	LU632_RS07885	0.24	-0.1
1,473,363	+	yfcF	LU632_RS07885	0.24	+1.0
1,473,363	+	yfcF	LU632_RS07885	0.24	-0.1
1,473,364	-	yfcF	LU632_RS07885	0.24	-0.7
1,473,364	-	yfcF	LU632_RS07885	0.24	-0.1
1,473,364	-	yfcF	LU632_RS07885	0.24	+2.0
1,473,552	+	yfcF	LU632_RS07885	0.53	-0.7
1,473,679	+	yfcF	LU632_RS07885	0.73	+0.3
1,473,684	+	yfcF	LU632_RS07885	0.74	+1.6
1,473,759	+	yfcF	LU632_RS07885	0.85	-0.9
1,473,779	+	yfcF	LU632_RS07885	0.88	+0.9
1,473,852	-				-2.0
1,473,913	-				+1.0
1,473,971	-				-1.4
1,473,971	-				-0.1
1,473,998	+				-1.0
1,474,006	+	yfcD	LU632_RS07890	0.11	+3.2
1,474,009	+	yfcD	LU632_RS07890	0.11	-0.3
1,474,009	+	yfcD	LU632_RS07890	0.11	-2.2
1,474,065	+	yfcD	LU632_RS07890	0.22	-0.7
1,474,066	-	yfcD	LU632_RS07890	0.22	-2.7
1,474,066	-	yfcD	LU632_RS07890	0.22	+1.8
1,474,066	-	yfcD	LU632_RS07890	0.22	-1.4
1,474,066	-	yfcD	LU632_RS07890	0.22	+0.2
1,474,130	+	yfcD	LU632_RS07890	0.34	-2.1
1,474,488	+				+1.3
1,474,489	-				-2.0
1,474,501	+				+0.8
1,474,502	-				+2.2