Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07050

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS07035 and LU632_RS07040 overlap by 4 nucleotidesLU632_RS07040 and LU632_RS07045 overlap by 26 nucleotidesLU632_RS07045 and LU632_RS07050 are separated by 1 nucleotidesLU632_RS07050 and LU632_RS07055 overlap by 8 nucleotidesLU632_RS07055 and LU632_RS07060 overlap by 4 nucleotidesLU632_RS07060 and LU632_RS07065 overlap by 4 nucleotides LU632_RS07035: LU632_RS07035 - recombination protein NinB, at 1,338,246 to 1,338,683 _RS07035 LU632_RS07040: LU632_RS07040 - hypothetical protein, at 1,338,680 to 1,339,069 _RS07040 LU632_RS07045: LU632_RS07045 - hypothetical protein, at 1,339,044 to 1,339,244 _RS07045 LU632_RS07050: LU632_RS07050 - DNA cytosine methyltransferase, at 1,339,246 to 1,340,109 _RS07050 LU632_RS07055: LU632_RS07055 - recombination protein NinG, at 1,340,102 to 1,340,677 _RS07055 LU632_RS07060: LU632_RS07060 - hypothetical protein, at 1,340,674 to 1,340,856 _RS07060 LU632_RS07065: LU632_RS07065 - antitermination protein, at 1,340,853 to 1,341,635 _RS07065 Position (kb) 1339 1340 1341Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1338.283 kb on + strandat 1338.347 kb on - strand, within LU632_RS07035at 1338.490 kb on + strand, within LU632_RS07035at 1338.707 kb on + strandat 1338.708 kb on - strandat 1338.744 kb on + strand, within LU632_RS07040at 1338.745 kb on - strand, within LU632_RS07040at 1338.752 kb on + strand, within LU632_RS07040at 1338.752 kb on + strand, within LU632_RS07040at 1338.752 kb on + strand, within LU632_RS07040at 1338.753 kb on - strand, within LU632_RS07040at 1338.753 kb on - strand, within LU632_RS07040at 1338.753 kb on - strand, within LU632_RS07040at 1338.753 kb on - strand, within LU632_RS07040at 1338.753 kb on - strand, within LU632_RS07040at 1338.798 kb on + strand, within LU632_RS07040at 1338.848 kb on - strand, within LU632_RS07040at 1338.848 kb on - strand, within LU632_RS07040at 1338.858 kb on - strand, within LU632_RS07040at 1338.997 kb on + strand, within LU632_RS07040at 1339.009 kb on - strand, within LU632_RS07040at 1339.010 kb on + strand, within LU632_RS07040at 1339.011 kb on - strand, within LU632_RS07040at 1339.011 kb on - strand, within LU632_RS07040at 1339.011 kb on - strand, within LU632_RS07040at 1339.191 kb on + strand, within LU632_RS07045at 1339.192 kb on - strand, within LU632_RS07045at 1339.246 kb on - strandat 1339.258 kb on + strandat 1339.332 kb on - strandat 1339.360 kb on - strand, within LU632_RS07050at 1339.384 kb on - strand, within LU632_RS07050at 1339.423 kb on + strand, within LU632_RS07050at 1339.424 kb on - strand, within LU632_RS07050at 1339.424 kb on - strand, within LU632_RS07050at 1339.538 kb on + strand, within LU632_RS07050at 1339.556 kb on - strand, within LU632_RS07050at 1339.556 kb on - strand, within LU632_RS07050at 1339.795 kb on + strand, within LU632_RS07050at 1339.795 kb on + strand, within LU632_RS07050at 1339.796 kb on - strand, within LU632_RS07050at 1340.086 kb on + strandat 1340.086 kb on + strandat 1340.086 kb on + strandat 1340.086 kb on + strandat 1340.086 kb on + strandat 1340.086 kb on + strandat 1340.086 kb on + strandat 1340.086 kb on + strandat 1340.086 kb on + strandat 1340.087 kb on - strandat 1340.087 kb on - strandat 1340.087 kb on - strandat 1340.087 kb on - strandat 1340.087 kb on - strandat 1340.087 kb on - strandat 1340.087 kb on - strandat 1340.087 kb on - strandat 1340.088 kb on + strandat 1340.089 kb on - strandat 1340.102 kb on - strandat 1340.159 kb on + strandat 1340.159 kb on + strandat 1340.209 kb on + strand, within LU632_RS07055at 1340.212 kb on + strand, within LU632_RS07055at 1340.212 kb on + strand, within LU632_RS07055at 1340.339 kb on + strand, within LU632_RS07055at 1340.339 kb on + strand, within LU632_RS07055at 1340.339 kb on + strand, within LU632_RS07055at 1340.339 kb on + strand, within LU632_RS07055at 1340.339 kb on + strand, within LU632_RS07055at 1340.340 kb on - strand, within LU632_RS07055at 1340.340 kb on - strand, within LU632_RS07055at 1340.340 kb on - strand, within LU632_RS07055at 1340.371 kb on + strand, within LU632_RS07055at 1340.371 kb on + strand, within LU632_RS07055at 1340.371 kb on + strand, within LU632_RS07055at 1340.464 kb on + strand, within LU632_RS07055at 1340.464 kb on + strand, within LU632_RS07055at 1340.465 kb on - strand, within LU632_RS07055at 1340.466 kb on + strand, within LU632_RS07055at 1340.619 kb on + strand, within LU632_RS07055at 1340.713 kb on + strand, within LU632_RS07060at 1340.713 kb on + strand, within LU632_RS07060at 1340.737 kb on + strand, within LU632_RS07060at 1340.784 kb on + strand, within LU632_RS07060at 1340.784 kb on + strand, within LU632_RS07060at 1340.784 kb on + strand, within LU632_RS07060at 1340.784 kb on + strand, within LU632_RS07060at 1340.784 kb on + strand, within LU632_RS07060at 1340.785 kb on - strand, within LU632_RS07060at 1340.785 kb on - strand, within LU632_RS07060at 1340.785 kb on - strand, within LU632_RS07060at 1340.785 kb on - strand, within LU632_RS07060at 1340.785 kb on - strand, within LU632_RS07060at 1340.785 kb on - strand, within LU632_RS07060at 1340.791 kb on + strand, within LU632_RS07060at 1340.819 kb on + strand, within LU632_RS07060at 1340.820 kb on - strand, within LU632_RS07060at 1340.878 kb on - strandat 1341.006 kb on + strand, within LU632_RS07065at 1341.006 kb on + strand, within LU632_RS07065at 1341.006 kb on + strand, within LU632_RS07065at 1341.006 kb on + strand, within LU632_RS07065at 1341.006 kb on + strand, within LU632_RS07065at 1341.006 kb on + strand, within LU632_RS07065at 1341.006 kb on + strand, within LU632_RS07065at 1341.006 kb on + strand, within LU632_RS07065at 1341.006 kb on + strand, within LU632_RS07065at 1341.006 kb on + strand, within LU632_RS07065at 1341.006 kb on + strand, within LU632_RS07065at 1341.006 kb on + strand, within LU632_RS07065at 1341.007 kb on - strand, within LU632_RS07065at 1341.009 kb on - strand, within LU632_RS07065at 1341.015 kb on - strand, within LU632_RS07065at 1341.048 kb on - strand, within LU632_RS07065at 1341.048 kb on - strand, within LU632_RS07065

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
remove
1,338,283 + -0.2
1,338,347 - LU632_RS07035 0.23 -1.9
1,338,490 + LU632_RS07035 0.56 -1.5
1,338,707 + -0.5
1,338,708 - +0.3
1,338,744 + LU632_RS07040 0.16 +1.0
1,338,745 - LU632_RS07040 0.17 -0.8
1,338,752 + LU632_RS07040 0.18 -0.2
1,338,752 + LU632_RS07040 0.18 +1.8
1,338,752 + LU632_RS07040 0.18 +0.5
1,338,753 - LU632_RS07040 0.19 +0.0
1,338,753 - LU632_RS07040 0.19 +0.8
1,338,753 - LU632_RS07040 0.19 +1.0
1,338,753 - LU632_RS07040 0.19 -0.9
1,338,753 - LU632_RS07040 0.19 -1.0
1,338,798 + LU632_RS07040 0.30 -2.1
1,338,848 - LU632_RS07040 0.43 -0.5
1,338,848 - LU632_RS07040 0.43 -0.1
1,338,858 - LU632_RS07040 0.46 -0.6
1,338,997 + LU632_RS07040 0.81 -1.6
1,339,009 - LU632_RS07040 0.84 +1.1
1,339,010 + LU632_RS07040 0.85 -1.4
1,339,011 - LU632_RS07040 0.85 +2.7
1,339,011 - LU632_RS07040 0.85 -0.1
1,339,011 - LU632_RS07040 0.85 -0.1
1,339,191 + LU632_RS07045 0.73 -0.0
1,339,192 - LU632_RS07045 0.74 -0.8
1,339,246 - +0.2
1,339,258 + -0.6
1,339,332 - -1.1
1,339,360 - LU632_RS07050 0.13 -0.3
1,339,384 - LU632_RS07050 0.16 -0.5
1,339,423 + LU632_RS07050 0.20 -0.0
1,339,424 - LU632_RS07050 0.21 +2.1
1,339,424 - LU632_RS07050 0.21 -1.5
1,339,538 + LU632_RS07050 0.34 -0.5
1,339,556 - LU632_RS07050 0.36 -1.4
1,339,556 - LU632_RS07050 0.36 -0.3
1,339,795 + LU632_RS07050 0.64 -0.8
1,339,795 + LU632_RS07050 0.64 +0.7
1,339,796 - LU632_RS07050 0.64 -2.0
1,340,086 + -0.2
1,340,086 + +2.0
1,340,086 + -0.3
1,340,086 + -0.3
1,340,086 + +1.7
1,340,086 + -2.9
1,340,086 + +1.5
1,340,086 + -0.7
1,340,086 + -1.2
1,340,087 - +0.0
1,340,087 - +1.4
1,340,087 - -0.3
1,340,087 - -2.6
1,340,087 - -0.2
1,340,087 - +0.8
1,340,087 - -0.2
1,340,087 - -1.5
1,340,088 + +0.1
1,340,089 - +1.3
1,340,102 - -0.0
1,340,159 + +0.0
1,340,159 + -1.0
1,340,209 + LU632_RS07055 0.19 -0.9
1,340,212 + LU632_RS07055 0.19 -1.7
1,340,212 + LU632_RS07055 0.19 -1.0
1,340,339 + LU632_RS07055 0.41 +0.9
1,340,339 + LU632_RS07055 0.41 +0.6
1,340,339 + LU632_RS07055 0.41 +0.3
1,340,339 + LU632_RS07055 0.41 -0.6
1,340,339 + LU632_RS07055 0.41 +0.4
1,340,340 - LU632_RS07055 0.41 -2.1
1,340,340 - LU632_RS07055 0.41 -1.3
1,340,340 - LU632_RS07055 0.41 -0.4
1,340,371 + LU632_RS07055 0.47 -0.4
1,340,371 + LU632_RS07055 0.47 -0.9
1,340,371 + LU632_RS07055 0.47 -0.6
1,340,464 + LU632_RS07055 0.63 -0.4
1,340,464 + LU632_RS07055 0.63 -1.8
1,340,465 - LU632_RS07055 0.63 -0.6
1,340,466 + LU632_RS07055 0.63 -1.4
1,340,619 + LU632_RS07055 0.90 +1.3
1,340,713 + LU632_RS07060 0.21 +1.0
1,340,713 + LU632_RS07060 0.21 -1.7
1,340,737 + LU632_RS07060 0.34 +1.3
1,340,784 + LU632_RS07060 0.60 +1.6
1,340,784 + LU632_RS07060 0.60 -1.8
1,340,784 + LU632_RS07060 0.60 +0.3
1,340,784 + LU632_RS07060 0.60 +1.3
1,340,784 + LU632_RS07060 0.60 +1.0
1,340,785 - LU632_RS07060 0.61 +3.0
1,340,785 - LU632_RS07060 0.61 -2.5
1,340,785 - LU632_RS07060 0.61 -2.1
1,340,785 - LU632_RS07060 0.61 -0.3
1,340,785 - LU632_RS07060 0.61 +1.1
1,340,785 - LU632_RS07060 0.61 -1.0
1,340,791 + LU632_RS07060 0.64 -0.4
1,340,819 + LU632_RS07060 0.79 -1.2
1,340,820 - LU632_RS07060 0.80 -0.3
1,340,878 - +1.5
1,341,006 + LU632_RS07065 0.20 +1.3
1,341,006 + LU632_RS07065 0.20 -0.3
1,341,006 + LU632_RS07065 0.20 -0.1
1,341,006 + LU632_RS07065 0.20 -3.1
1,341,006 + LU632_RS07065 0.20 +0.9
1,341,006 + LU632_RS07065 0.20 +1.1
1,341,006 + LU632_RS07065 0.20 +0.9
1,341,006 + LU632_RS07065 0.20 -3.1
1,341,006 + LU632_RS07065 0.20 +0.7
1,341,006 + LU632_RS07065 0.20 -1.2
1,341,006 + LU632_RS07065 0.20 -0.3
1,341,006 + LU632_RS07065 0.20 -1.2
1,341,007 - LU632_RS07065 0.20 -3.3
1,341,009 - LU632_RS07065 0.20 -2.0
1,341,015 - LU632_RS07065 0.21 +2.1
1,341,048 - LU632_RS07065 0.25 -0.5
1,341,048 - LU632_RS07065 0.25 -0.3

Or see this region's nucleotide sequence