Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05480

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntruvX and LU632_RS05475 overlap by 1 nucleotidesLU632_RS05475 and gshB are separated by 93 nucleotidesgshB and rsmE are separated by 83 nucleotidesrsmE and endA are separated by 74 nucleotides LU632_RS05470: ruvX - Holliday junction resolvase RuvX, at 1,055,639 to 1,056,061 ruvX LU632_RS05475: LU632_RS05475 - YqgE/AlgH family protein, at 1,056,061 to 1,056,624 _RS05475 LU632_RS05480: gshB - glutathione synthase, at 1,056,718 to 1,057,662 gshB LU632_RS05485: rsmE - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 1,057,746 to 1,058,477 rsmE LU632_RS05490: endA - deoxyribonuclease I, at 1,058,552 to 1,059,265 endA Position (kb) 1056 1057 1058Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1056.097 kb on - strandat 1056.454 kb on - strand, within LU632_RS05475at 1056.505 kb on - strand, within LU632_RS05475at 1056.550 kb on - strand, within LU632_RS05475at 1056.552 kb on - strand, within LU632_RS05475at 1056.584 kb on - strandat 1056.584 kb on - strandat 1056.794 kb on - strandat 1056.794 kb on - strandat 1057.223 kb on - strand, within gshBat 1057.297 kb on - strand, within gshBat 1057.736 kb on - strandat 1057.774 kb on - strandat 1057.774 kb on - strandat 1057.831 kb on - strand, within rsmEat 1057.831 kb on - strand, within rsmEat 1057.937 kb on + strand, within rsmEat 1057.937 kb on + strand, within rsmEat 1057.937 kb on + strand, within rsmEat 1057.938 kb on - strand, within rsmEat 1057.938 kb on - strand, within rsmEat 1057.938 kb on - strand, within rsmEat 1057.940 kb on + strand, within rsmEat 1057.941 kb on - strand, within rsmEat 1057.941 kb on - strand, within rsmEat 1058.028 kb on + strand, within rsmEat 1058.029 kb on - strand, within rsmEat 1058.156 kb on + strand, within rsmEat 1058.232 kb on + strand, within rsmEat 1058.233 kb on - strand, within rsmEat 1058.233 kb on - strand, within rsmEat 1058.233 kb on - strand, within rsmEat 1058.281 kb on - strand, within rsmEat 1058.315 kb on + strand, within rsmEat 1058.471 kb on + strandat 1058.471 kb on + strandat 1058.472 kb on - strandat 1058.472 kb on - strandat 1058.573 kb on + strandat 1058.574 kb on - strandat 1058.574 kb on - strandat 1058.574 kb on - strandat 1058.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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1,056,097 - -3.5
1,056,454 - LU632_RS05475 0.70 -2.3
1,056,505 - LU632_RS05475 0.79 -3.7
1,056,550 - LU632_RS05475 0.87 -1.7
1,056,552 - LU632_RS05475 0.87 -0.6
1,056,584 - -0.7
1,056,584 - -0.9
1,056,794 - +0.3
1,056,794 - +1.3
1,057,223 - gshB LU632_RS05480 0.53 -1.3
1,057,297 - gshB LU632_RS05480 0.61 -0.7
1,057,736 - +2.3
1,057,774 - +1.2
1,057,774 - +4.1
1,057,831 - rsmE LU632_RS05485 0.12 +0.5
1,057,831 - rsmE LU632_RS05485 0.12 +2.3
1,057,937 + rsmE LU632_RS05485 0.26 +2.3
1,057,937 + rsmE LU632_RS05485 0.26 +0.3
1,057,937 + rsmE LU632_RS05485 0.26 -1.7
1,057,938 - rsmE LU632_RS05485 0.26 +0.3
1,057,938 - rsmE LU632_RS05485 0.26 +0.7
1,057,938 - rsmE LU632_RS05485 0.26 +1.5
1,057,940 + rsmE LU632_RS05485 0.27 -0.2
1,057,941 - rsmE LU632_RS05485 0.27 -0.5
1,057,941 - rsmE LU632_RS05485 0.27 +2.6
1,058,028 + rsmE LU632_RS05485 0.39 -1.2
1,058,029 - rsmE LU632_RS05485 0.39 +2.5
1,058,156 + rsmE LU632_RS05485 0.56 +1.0
1,058,232 + rsmE LU632_RS05485 0.66 +0.3
1,058,233 - rsmE LU632_RS05485 0.67 +1.2
1,058,233 - rsmE LU632_RS05485 0.67 -1.2
1,058,233 - rsmE LU632_RS05485 0.67 +0.3
1,058,281 - rsmE LU632_RS05485 0.73 +0.3
1,058,315 + rsmE LU632_RS05485 0.78 -1.4
1,058,471 + -1.6
1,058,471 + -0.0
1,058,472 - +1.4
1,058,472 - +2.4
1,058,573 + -0.5
1,058,574 - -1.4
1,058,574 - -1.3
1,058,574 - -0.0
1,058,576 - -0.6

Or see this region's nucleotide sequence