Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05110

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05100 and LU632_RS05105 are separated by 10 nucleotidesLU632_RS05105 and LU632_RS05110 are separated by 15 nucleotidesLU632_RS05110 and LU632_RS05115 are separated by 164 nucleotidesLU632_RS05115 and LU632_RS05120 overlap by 1 nucleotidesLU632_RS05120 and LU632_RS05125 are separated by 38 nucleotides LU632_RS05100: LU632_RS05100 - hypothetical protein, at 992,254 to 992,616 _RS05100 LU632_RS05105: LU632_RS05105 - DUF4225 domain-containing protein, at 992,627 to 993,478 _RS05105 LU632_RS05110: LU632_RS05110 - type VI secretion system tube protein Hcp, at 993,494 to 993,958 _RS05110 LU632_RS05115: LU632_RS05115 - hypothetical protein, at 994,123 to 994,470 _RS05115 LU632_RS05120: LU632_RS05120 - TIGR03758 family integrating conjugative element protein, at 994,470 to 994,712 _RS05120 LU632_RS05125: LU632_RS05125 - TIGR03745 family integrating conjugative element membrane protein, at 994,751 to 995,131 _RS05125 Position (kb) 993 994Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 992.749 kb on + strand, within LU632_RS05105at 992.869 kb on - strand, within LU632_RS05105at 992.899 kb on - strand, within LU632_RS05105at 992.899 kb on - strand, within LU632_RS05105at 992.899 kb on - strand, within LU632_RS05105at 992.920 kb on + strand, within LU632_RS05105at 992.923 kb on + strand, within LU632_RS05105at 992.924 kb on - strand, within LU632_RS05105at 992.924 kb on - strand, within LU632_RS05105at 992.924 kb on - strand, within LU632_RS05105at 992.958 kb on + strand, within LU632_RS05105at 992.959 kb on - strand, within LU632_RS05105at 992.959 kb on - strand, within LU632_RS05105at 992.989 kb on - strand, within LU632_RS05105at 993.013 kb on - strand, within LU632_RS05105at 993.030 kb on + strand, within LU632_RS05105at 993.031 kb on - strand, within LU632_RS05105at 993.044 kb on + strand, within LU632_RS05105at 993.045 kb on - strand, within LU632_RS05105at 993.045 kb on - strand, within LU632_RS05105at 993.045 kb on - strand, within LU632_RS05105at 993.092 kb on - strand, within LU632_RS05105at 993.092 kb on - strand, within LU632_RS05105at 993.157 kb on - strand, within LU632_RS05105at 993.252 kb on - strand, within LU632_RS05105at 993.357 kb on + strand, within LU632_RS05105at 993.432 kb on + strandat 993.432 kb on + strandat 993.432 kb on + strandat 993.432 kb on + strandat 993.432 kb on + strandat 993.433 kb on - strandat 993.433 kb on - strandat 993.433 kb on - strandat 993.433 kb on - strandat 993.462 kb on + strandat 993.462 kb on + strandat 993.466 kb on + strandat 993.467 kb on - strandat 993.467 kb on - strandat 993.467 kb on - strandat 993.502 kb on - strandat 993.502 kb on - strandat 993.504 kb on + strandat 993.504 kb on + strandat 993.505 kb on - strandat 993.817 kb on - strand, within LU632_RS05110at 993.817 kb on - strand, within LU632_RS05110at 993.817 kb on - strand, within LU632_RS05110at 993.817 kb on - strand, within LU632_RS05110at 993.817 kb on - strand, within LU632_RS05110at 993.817 kb on - strand, within LU632_RS05110at 993.873 kb on + strand, within LU632_RS05110at 994.122 kb on + strandat 994.122 kb on + strandat 994.123 kb on - strandat 994.435 kb on + strand, within LU632_RS05115at 994.435 kb on + strand, within LU632_RS05115at 994.436 kb on - strandat 994.436 kb on - strandat 994.450 kb on + strandat 994.503 kb on - strand, within LU632_RS05120at 994.685 kb on + strand, within LU632_RS05120at 994.716 kb on + strandat 994.716 kb on + strandat 994.717 kb on - strandat 994.750 kb on + strandat 994.751 kb on - strandat 994.769 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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992,749 + LU632_RS05105 0.14 -2.5
992,869 - LU632_RS05105 0.28 +5.6
992,899 - LU632_RS05105 0.32 +0.4
992,899 - LU632_RS05105 0.32 -1.6
992,899 - LU632_RS05105 0.32 +0.1
992,920 + LU632_RS05105 0.34 +1.3
992,923 + LU632_RS05105 0.35 -0.3
992,924 - LU632_RS05105 0.35 +0.9
992,924 - LU632_RS05105 0.35 -0.2
992,924 - LU632_RS05105 0.35 +0.2
992,958 + LU632_RS05105 0.39 -2.7
992,959 - LU632_RS05105 0.39 -2.2
992,959 - LU632_RS05105 0.39 +0.0
992,989 - LU632_RS05105 0.42 -1.4
993,013 - LU632_RS05105 0.45 +1.9
993,030 + LU632_RS05105 0.47 +1.3
993,031 - LU632_RS05105 0.47 -0.3
993,044 + LU632_RS05105 0.49 +0.3
993,045 - LU632_RS05105 0.49 +0.2
993,045 - LU632_RS05105 0.49 -0.6
993,045 - LU632_RS05105 0.49 -1.5
993,092 - LU632_RS05105 0.55 +2.0
993,092 - LU632_RS05105 0.55 +0.1
993,157 - LU632_RS05105 0.62 +0.9
993,252 - LU632_RS05105 0.73 +0.3
993,357 + LU632_RS05105 0.86 +2.3
993,432 + -0.5
993,432 + +1.0
993,432 + -0.6
993,432 + -1.6
993,432 + -0.7
993,433 - -0.8
993,433 - +1.3
993,433 - +1.0
993,433 - +0.6
993,462 + +0.1
993,462 + +0.7
993,466 + -0.6
993,467 - -0.7
993,467 - -0.1
993,467 - -2.2
993,502 - +0.1
993,502 - -1.1
993,504 + +0.3
993,504 + -0.1
993,505 - +0.7
993,817 - LU632_RS05110 0.69 +0.8
993,817 - LU632_RS05110 0.69 +0.6
993,817 - LU632_RS05110 0.69 -0.5
993,817 - LU632_RS05110 0.69 -1.0
993,817 - LU632_RS05110 0.69 +2.3
993,817 - LU632_RS05110 0.69 +0.3
993,873 + LU632_RS05110 0.82 +0.4
994,122 + +3.1
994,122 + +0.5
994,123 - -1.1
994,435 + LU632_RS05115 0.90 -3.6
994,435 + LU632_RS05115 0.90 +0.8
994,436 - +0.8
994,436 - -1.2
994,450 + -1.2
994,503 - LU632_RS05120 0.14 +2.1
994,685 + LU632_RS05120 0.88 +1.3
994,716 + +3.1
994,716 + -1.3
994,717 - -1.4
994,750 + -2.4
994,751 - +2.3
994,769 - -0.5

Or see this region's nucleotide sequence