Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04715

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04710 and LU632_RS04715 are separated by 350 nucleotidesLU632_RS04715 and LU632_RS04720 are separated by 207 nucleotidesLU632_RS04720 and LU632_RS04725 overlap by 14 nucleotides LU632_RS04710: LU632_RS04710 - IS110 family transposase, at 923,362 to 924,359 _RS04710 LU632_RS04715: LU632_RS04715 - IS5 family transposase, at 924,710 to 925,477 _RS04715 LU632_RS04720: LU632_RS04720 - response regulator transcription factor, at 925,685 to 926,320 _RS04720 LU632_RS04725: LU632_RS04725 - transporter substrate-binding domain-containing protein, at 926,307 to 929,459 _RS04725 Position (kb) 924 925 926Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 923.907 kb on - strand, within LU632_RS04710at 924.491 kb on - strandat 924.491 kb on - strandat 924.491 kb on - strandat 924.516 kb on - strandat 924.516 kb on - strandat 924.568 kb on + strandat 924.569 kb on - strandat 924.590 kb on + strandat 924.591 kb on - strandat 924.591 kb on - strandat 924.597 kb on + strandat 924.598 kb on - strandat 924.599 kb on + strandat 924.600 kb on - strandat 924.601 kb on + strandat 924.602 kb on - strandat 924.629 kb on + strandat 924.630 kb on - strandat 924.665 kb on + strandat 924.666 kb on - strandat 924.666 kb on - strandat 924.672 kb on + strandat 924.673 kb on - strandat 924.674 kb on + strandat 924.674 kb on + strandat 924.675 kb on - strandat 924.675 kb on - strandat 924.689 kb on + strandat 924.708 kb on + strandat 924.728 kb on + strandat 924.752 kb on - strandat 924.854 kb on - strand, within LU632_RS04715at 924.854 kb on - strand, within LU632_RS04715at 924.958 kb on + strand, within LU632_RS04715at 924.959 kb on - strand, within LU632_RS04715at 924.963 kb on - strand, within LU632_RS04715at 925.119 kb on + strand, within LU632_RS04715at 925.119 kb on - strand, within LU632_RS04715at 925.120 kb on - strand, within LU632_RS04715at 925.142 kb on - strand, within LU632_RS04715at 925.338 kb on - strand, within LU632_RS04715at 925.391 kb on - strand, within LU632_RS04715at 925.413 kb on - strandat 925.500 kb on - strandat 925.500 kb on - strandat 925.500 kb on - strandat 925.500 kb on - strandat 925.501 kb on + strandat 925.501 kb on + strandat 925.501 kb on + strandat 925.501 kb on + strandat 925.501 kb on + strandat 925.502 kb on + strandat 925.502 kb on - strandat 925.549 kb on - strandat 925.576 kb on + strandat 925.577 kb on - strandat 925.577 kb on - strandat 925.600 kb on + strandat 925.600 kb on + strandat 925.600 kb on + strandat 925.600 kb on + strandat 925.601 kb on - strandat 925.601 kb on - strandat 925.601 kb on - strandat 925.628 kb on + strandat 925.628 kb on + strandat 925.628 kb on + strandat 925.629 kb on - strandat 925.631 kb on - strandat 925.631 kb on - strandat 925.684 kb on + strandat 925.684 kb on + strandat 925.685 kb on - strandat 925.685 kb on - strandat 925.762 kb on + strand, within LU632_RS04720at 925.774 kb on + strand, within LU632_RS04720at 925.781 kb on - strand, within LU632_RS04720at 925.781 kb on - strand, within LU632_RS04720at 925.886 kb on - strand, within LU632_RS04720at 925.906 kb on + strand, within LU632_RS04720at 925.906 kb on + strand, within LU632_RS04720at 925.942 kb on - strand, within LU632_RS04720at 925.943 kb on + strand, within LU632_RS04720at 925.982 kb on - strand, within LU632_RS04720at 926.032 kb on + strand, within LU632_RS04720at 926.032 kb on + strand, within LU632_RS04720at 926.212 kb on + strand, within LU632_RS04720at 926.213 kb on - strand, within LU632_RS04720at 926.228 kb on + strand, within LU632_RS04720at 926.228 kb on + strand, within LU632_RS04720at 926.228 kb on + strand, within LU632_RS04720at 926.229 kb on - strand, within LU632_RS04720at 926.229 kb on - strand, within LU632_RS04720at 926.230 kb on + strand, within LU632_RS04720at 926.278 kb on + strandat 926.336 kb on - strandat 926.381 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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923,907 - LU632_RS04710 0.55 -1.9
924,491 - -0.4
924,491 - -1.9
924,491 - +0.2
924,516 - +0.2
924,516 - +0.1
924,568 + -0.1
924,569 - +1.7
924,590 + +1.3
924,591 - -0.4
924,591 - +1.6
924,597 + +0.6
924,598 - +1.9
924,599 + +0.3
924,600 - -0.8
924,601 + -1.2
924,602 - -0.8
924,629 + -1.2
924,630 - +0.1
924,665 + -3.6
924,666 - -2.0
924,666 - +0.4
924,672 + -2.2
924,673 - +0.6
924,674 + +0.8
924,674 + -1.2
924,675 - -0.7
924,675 - -1.7
924,689 + -0.6
924,708 + +0.1
924,728 + -0.1
924,752 - -1.0
924,854 - LU632_RS04715 0.19 +0.2
924,854 - LU632_RS04715 0.19 -0.3
924,958 + LU632_RS04715 0.32 -0.3
924,959 - LU632_RS04715 0.32 -0.8
924,963 - LU632_RS04715 0.33 +0.3
925,119 + LU632_RS04715 0.53 +2.6
925,119 - LU632_RS04715 0.53 -0.2
925,120 - LU632_RS04715 0.53 +1.5
925,142 - LU632_RS04715 0.56 +0.2
925,338 - LU632_RS04715 0.82 -0.1
925,391 - LU632_RS04715 0.89 -1.1
925,413 - +2.9
925,500 - -1.9
925,500 - +1.4
925,500 - -1.7
925,500 - +0.8
925,501 + -0.3
925,501 + +1.1
925,501 + +0.1
925,501 + -2.3
925,501 + +2.7
925,502 + +2.6
925,502 - +0.8
925,549 - +0.3
925,576 + -0.1
925,577 - -0.6
925,577 - +0.4
925,600 + -0.6
925,600 + +2.3
925,600 + -1.3
925,600 + -0.2
925,601 - -1.3
925,601 - +1.2
925,601 - -2.4
925,628 + -1.1
925,628 + -2.1
925,628 + +1.1
925,629 - +1.5
925,631 - -0.4
925,631 - +0.7
925,684 + +1.4
925,684 + -0.3
925,685 - -2.6
925,685 - -0.3
925,762 + LU632_RS04720 0.12 +0.4
925,774 + LU632_RS04720 0.14 -2.1
925,781 - LU632_RS04720 0.15 -0.1
925,781 - LU632_RS04720 0.15 +0.7
925,886 - LU632_RS04720 0.32 -0.4
925,906 + LU632_RS04720 0.35 -1.2
925,906 + LU632_RS04720 0.35 -2.6
925,942 - LU632_RS04720 0.40 -1.5
925,943 + LU632_RS04720 0.41 -0.0
925,982 - LU632_RS04720 0.47 +1.2
926,032 + LU632_RS04720 0.55 -0.2
926,032 + LU632_RS04720 0.55 +0.4
926,212 + LU632_RS04720 0.83 -0.8
926,213 - LU632_RS04720 0.83 +1.8
926,228 + LU632_RS04720 0.85 -2.1
926,228 + LU632_RS04720 0.85 -1.7
926,228 + LU632_RS04720 0.85 +2.4
926,229 - LU632_RS04720 0.86 +0.7
926,229 - LU632_RS04720 0.86 +1.7
926,230 + LU632_RS04720 0.86 +0.1
926,278 + +0.6
926,336 - -0.3
926,381 + +0.7

Or see this region's nucleotide sequence