Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04535 and LU632_RS04540 are separated by 98 nucleotides LU632_RS04540 and LU632_RS04545 are separated by 238 nucleotides LU632_RS04545 and LU632_RS04550 are separated by 120 nucleotides LU632_RS04550 and LU632_RS04555 are separated by 169 nucleotides
LU632_RS04535: LU632_RS04535 - IS91 family transposase, at 889,196 to 890,419
_RS04535
LU632_RS04540: LU632_RS04540 - recombinase family protein, at 890,518 to 890,937
_RS04540
LU632_RS04545: LU632_RS04545 - hypothetical protein, at 891,176 to 892,093
_RS04545
LU632_RS04550: LU632_RS04550 - DUF2913 family protein, at 892,214 to 892,813
_RS04550
LU632_RS04555: LU632_RS04555 - IS481 family transposase, at 892,983 to 894,023
_RS04555
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 890.500 kb on + strand at 890.500 kb on + strand at 890.500 kb on + strand at 890.546 kb on + strand at 890.546 kb on + strand at 890.568 kb on - strand, within LU632_RS04540 at 890.634 kb on + strand, within LU632_RS04540 at 890.634 kb on + strand, within LU632_RS04540 at 890.635 kb on - strand, within LU632_RS04540 at 890.657 kb on + strand, within LU632_RS04540 at 890.669 kb on + strand, within LU632_RS04540 at 890.669 kb on + strand, within LU632_RS04540 at 890.682 kb on - strand, within LU632_RS04540 at 890.779 kb on - strand, within LU632_RS04540 at 890.880 kb on + strand, within LU632_RS04540 at 890.881 kb on - strand, within LU632_RS04540 at 891.019 kb on + strand at 891.019 kb on + strand at 891.023 kb on + strand at 891.060 kb on + strand at 891.735 kb on - strand, within LU632_RS04545 at 891.785 kb on - strand, within LU632_RS04545 at 891.788 kb on + strand, within LU632_RS04545 at 891.788 kb on + strand, within LU632_RS04545 at 891.789 kb on - strand, within LU632_RS04545 at 891.825 kb on + strand, within LU632_RS04545 at 891.920 kb on - strand, within LU632_RS04545 at 891.920 kb on - strand, within LU632_RS04545 at 892.018 kb on + strand at 892.018 kb on + strand at 892.153 kb on - strand at 892.194 kb on + strand at 892.194 kb on + strand at 892.194 kb on + strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.196 kb on + strand at 892.207 kb on - strand at 892.511 kb on + strand, within LU632_RS04550 at 892.511 kb on + strand, within LU632_RS04550 at 892.583 kb on + strand, within LU632_RS04550 at 892.619 kb on + strand, within LU632_RS04550 at 892.620 kb on - strand, within LU632_RS04550 at 892.658 kb on + strand, within LU632_RS04550 at 892.672 kb on - strand, within LU632_RS04550 at 892.716 kb on + strand, within LU632_RS04550 at 892.783 kb on + strand at 892.784 kb on - strand at 892.819 kb on - strand at 892.819 kb on - strand at 892.822 kb on + strand at 892.822 kb on + strand at 892.823 kb on - strand at 892.825 kb on - strand at 892.830 kb on - strand at 892.834 kb on - strand at 892.895 kb on + strand at 892.896 kb on - strand at 892.897 kb on + strand at 892.897 kb on + strand at 892.898 kb on - strand at 892.898 kb on - strand at 892.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 890,500 + +1.7 890,500 + -0.1 890,500 + +1.2 890,546 + -1.7 890,546 + -1.3 890,568 - LU632_RS04540 0.12 -1.0 890,634 + LU632_RS04540 0.28 -0.5 890,634 + LU632_RS04540 0.28 +0.2 890,635 - LU632_RS04540 0.28 -0.6 890,657 + LU632_RS04540 0.33 -0.6 890,669 + LU632_RS04540 0.36 -0.6 890,669 + LU632_RS04540 0.36 -1.3 890,682 - LU632_RS04540 0.39 -3.2 890,779 - LU632_RS04540 0.62 -1.0 890,880 + LU632_RS04540 0.86 -0.5 890,881 - LU632_RS04540 0.86 +0.1 891,019 + -1.2 891,019 + -0.5 891,023 + -0.2 891,060 + -1.0 891,735 - LU632_RS04545 0.61 -1.1 891,785 - LU632_RS04545 0.66 +2.2 891,788 + LU632_RS04545 0.67 -0.0 891,788 + LU632_RS04545 0.67 -3.5 891,789 - LU632_RS04545 0.67 +0.1 891,825 + LU632_RS04545 0.71 +1.6 891,920 - LU632_RS04545 0.81 +1.1 891,920 - LU632_RS04545 0.81 +0.7 892,018 + -0.7 892,018 + +1.1 892,153 - -0.5 892,194 + -2.9 892,194 + +1.2 892,194 + -2.1 892,195 - +0.2 892,195 - +2.2 892,195 - -1.3 892,195 - +1.8 892,195 - +1.3 892,196 + -1.7 892,207 - -1.0 892,511 + LU632_RS04550 0.49 +2.2 892,511 + LU632_RS04550 0.49 +0.7 892,583 + LU632_RS04550 0.61 -0.0 892,619 + LU632_RS04550 0.68 +1.3 892,620 - LU632_RS04550 0.68 +1.1 892,658 + LU632_RS04550 0.74 -2.6 892,672 - LU632_RS04550 0.76 -0.3 892,716 + LU632_RS04550 0.84 +0.9 892,783 + -0.8 892,784 - -0.7 892,819 - +0.3 892,819 - +1.2 892,822 + +0.7 892,822 + -1.2 892,823 - +0.5 892,825 - -0.3 892,830 - +3.0 892,834 - +0.7 892,895 + -0.3 892,896 - +0.2 892,897 + -1.3 892,897 + -1.9 892,898 - +1.1 892,898 - +0.4 892,913 - -0.3
Or see this region's nucleotide sequence