Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04495 and LU632_RS04500 are separated by 238 nucleotides LU632_RS04500 and LU632_RS04505 are separated by 407 nucleotides LU632_RS04505 and LU632_RS04510 are separated by 147 nucleotides
LU632_RS04495: LU632_RS04495 - hypothetical protein, at 884,011 to 884,283
_RS04495
LU632_RS04500: LU632_RS04500 - hypothetical protein, at 884,522 to 884,725
_RS04500
LU632_RS04505: LU632_RS04505 - H-NS histone family protein, at 885,133 to 885,585
_RS04505
LU632_RS04510: LU632_RS04510 - IS91 family transposase, at 885,733 to 886,956
_RS04510
Position (kb) 885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 884.598 kb on + strand, within LU632_RS04500 at 884.598 kb on + strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.699 kb on - strand, within LU632_RS04500 at 884.713 kb on + strand at 884.713 kb on + strand at 884.713 kb on + strand at 884.714 kb on + strand at 884.714 kb on - strand at 884.718 kb on + strand at 884.739 kb on + strand at 884.739 kb on + strand at 884.751 kb on + strand at 884.766 kb on + strand at 884.766 kb on + strand at 884.766 kb on + strand at 884.767 kb on - strand at 884.837 kb on + strand at 884.838 kb on - strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.851 kb on - strand at 884.927 kb on - strand at 884.927 kb on - strand at 884.928 kb on + strand at 884.951 kb on - strand at 884.980 kb on - strand at 884.980 kb on - strand at 885.014 kb on + strand at 885.015 kb on - strand at 885.015 kb on - strand at 885.015 kb on - strand at 885.017 kb on + strand at 885.126 kb on + strand at 885.126 kb on + strand at 885.126 kb on + strand at 885.131 kb on + strand at 885.132 kb on - strand at 885.253 kb on - strand, within LU632_RS04505 at 885.279 kb on - strand, within LU632_RS04505 at 885.304 kb on - strand, within LU632_RS04505 at 885.310 kb on - strand, within LU632_RS04505 at 885.310 kb on - strand, within LU632_RS04505 at 885.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 884,598 + LU632_RS04500 0.37 +0.0 884,598 + LU632_RS04500 0.37 -0.4 884,599 - LU632_RS04500 0.38 -0.7 884,599 - LU632_RS04500 0.38 -0.6 884,599 - LU632_RS04500 0.38 -0.5 884,599 - LU632_RS04500 0.38 -1.8 884,599 - LU632_RS04500 0.38 -0.2 884,699 - LU632_RS04500 0.87 +0.4 884,713 + +0.3 884,713 + +1.0 884,713 + +0.4 884,714 + +0.7 884,714 - -1.8 884,718 + +0.3 884,739 + +0.6 884,739 + -1.9 884,751 + +4.4 884,766 + +0.2 884,766 + -1.0 884,766 + -0.6 884,767 - -0.8 884,837 + -1.2 884,838 - -2.8 884,846 + -0.9 884,846 + +1.2 884,846 + -0.3 884,846 + -0.1 884,846 + -1.4 884,846 + -1.8 884,847 - -2.1 884,847 - -0.7 884,847 - -0.2 884,847 - -0.6 884,847 - -0.7 884,847 - -1.4 884,851 - +0.9 884,927 - -0.5 884,927 - +0.0 884,928 + -0.0 884,951 - +0.9 884,980 - -1.3 884,980 - -0.1 885,014 + +0.5 885,015 - -0.7 885,015 - -1.6 885,015 - -1.2 885,017 + -3.5 885,126 + -1.3 885,126 + -1.8 885,126 + +0.0 885,131 + -0.8 885,132 - -0.8 885,253 - LU632_RS04505 0.26 -1.4 885,279 - LU632_RS04505 0.32 -1.0 885,304 - LU632_RS04505 0.38 +2.2 885,310 - LU632_RS04505 0.39 -0.8 885,310 - LU632_RS04505 0.39 +1.1 885,586 - -0.8
Or see this region's nucleotide sequence