Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04375

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
863,612	+				+0.3
863,612	+				+0.4
863,655	-				-0.0
863,655	-				+0.2
863,659	-				-0.8
863,659	-				+1.0
863,663	+				-2.2
863,663	+				-0.5
863,664	-				-2.5
863,683	-				+1.2
863,795	+				-1.8
863,806	+				-2.1
863,972	-				-0.7
864,042	-				+0.6
864,042	-				-1.7
864,042	-				+1.0
864,075	+				-3.1
864,075	+				+0.2
864,076	-				-0.7
864,102	-				+2.2
864,122	+				-2.3
864,122	+				+1.1
864,122	+				+1.5
864,123	-				-0.8
864,126	+				+0.2
864,126	+				-2.2
864,177	+				-0.6
864,229	-		LU632_RS04370	0.31	-0.3
864,252	+		LU632_RS04370	0.41	+0.3
864,272	+		LU632_RS04370	0.50	-1.0
864,342	-		LU632_RS04370	0.80	+1.5
864,342	-		LU632_RS04370	0.80	+0.2
864,415	-				+0.1
865,942	-		LU632_RS04380	0.23	-2.5
866,075	-		LU632_RS04380	0.47	+0.0
866,075	-		LU632_RS04380	0.47	+0.6
866,075	-		LU632_RS04380	0.47	-0.8
866,134	+		LU632_RS04380	0.57	-0.6
866,210	+		LU632_RS04380	0.71	-1.5
866,211	-		LU632_RS04380	0.71	-2.9
866,392	-				-2.3
866,425	+				-2.0
866,427	+				-2.3
866,473	-				-1.2
866,473	-				-0.1
866,478	-				+0.1
866,478	-				+0.8
866,480	-				-2.5
866,517	+				+1.9
866,517	+				+0.7
866,517	+				+1.3
866,519	+				-1.1
866,519	+				+0.3
866,519	+				+0.6
866,575	+				+0.6
866,576	-				+1.3
866,582	+				-2.6
866,582	+				-3.3