Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04265 and ulaD overlap by 4 nucleotides ulaD and LU632_RS04275 are separated by 2 nucleotides LU632_RS04275 and araD overlap by 4 nucleotides
LU632_RS04265: LU632_RS04265 - carbohydrate kinase, at 848,197 to 849,681
_RS04265
LU632_RS04270: ulaD - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 849,678 to 850,340
ulaD
LU632_RS04275: LU632_RS04275 - L-ribulose-5-phosphate 3-epimerase, at 850,343 to 851,200
_RS04275
LU632_RS04280: araD - L-ribulose-5-phosphate 4-epimerase, at 851,197 to 851,895
araD
Position (kb) 849
850
851 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 848.678 kb on - strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.741 kb on + strand, within LU632_RS04265 at 848.741 kb on + strand, within LU632_RS04265 at 848.743 kb on + strand, within LU632_RS04265 at 848.749 kb on - strand, within LU632_RS04265 at 848.853 kb on + strand, within LU632_RS04265 at 848.853 kb on + strand, within LU632_RS04265 at 848.854 kb on - strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.079 kb on - strand, within LU632_RS04265 at 849.079 kb on - strand, within LU632_RS04265 at 849.162 kb on - strand, within LU632_RS04265 at 849.224 kb on - strand, within LU632_RS04265 at 849.263 kb on - strand, within LU632_RS04265 at 849.263 kb on - strand, within LU632_RS04265 at 849.300 kb on - strand, within LU632_RS04265 at 849.307 kb on - strand, within LU632_RS04265 at 849.310 kb on + strand, within LU632_RS04265 at 849.311 kb on - strand, within LU632_RS04265 at 849.337 kb on - strand, within LU632_RS04265 at 849.337 kb on - strand, within LU632_RS04265 at 849.337 kb on - strand, within LU632_RS04265 at 849.379 kb on - strand, within LU632_RS04265 at 849.673 kb on - strand at 849.876 kb on - strand, within ulaD at 850.090 kb on - strand, within ulaD at 850.235 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.268 kb on + strand, within ulaD at 850.325 kb on + strand at 850.337 kb on - strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.365 kb on + strand at 850.365 kb on + strand at 850.366 kb on - strand at 850.366 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.455 kb on + strand, within LU632_RS04275 at 850.548 kb on + strand, within LU632_RS04275 at 850.592 kb on - strand, within LU632_RS04275 at 850.622 kb on + strand, within LU632_RS04275 at 850.701 kb on - strand, within LU632_RS04275 at 850.701 kb on - strand, within LU632_RS04275 at 850.703 kb on + strand, within LU632_RS04275 at 850.819 kb on + strand, within LU632_RS04275 at 850.834 kb on + strand, within LU632_RS04275 at 850.834 kb on + strand, within LU632_RS04275 at 850.881 kb on + strand, within LU632_RS04275 at 850.882 kb on - strand, within LU632_RS04275 at 850.882 kb on - strand, within LU632_RS04275 at 851.256 kb on + strand at 851.256 kb on + strand at 851.257 kb on - strand at 851.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 848,678 - LU632_RS04265 0.32 -0.5 848,724 + LU632_RS04265 0.35 -3.6 848,724 + LU632_RS04265 0.35 -0.1 848,724 + LU632_RS04265 0.35 -1.9 848,724 + LU632_RS04265 0.35 -0.9 848,741 + LU632_RS04265 0.37 +1.5 848,741 + LU632_RS04265 0.37 -1.2 848,743 + LU632_RS04265 0.37 -1.1 848,749 - LU632_RS04265 0.37 -1.1 848,853 + LU632_RS04265 0.44 -2.2 848,853 + LU632_RS04265 0.44 -2.2 848,854 - LU632_RS04265 0.44 -1.4 849,076 + LU632_RS04265 0.59 -2.2 849,076 + LU632_RS04265 0.59 -0.9 849,076 + LU632_RS04265 0.59 -0.3 849,077 - LU632_RS04265 0.59 -1.6 849,077 - LU632_RS04265 0.59 +1.4 849,077 - LU632_RS04265 0.59 +0.2 849,077 - LU632_RS04265 0.59 -1.4 849,079 - LU632_RS04265 0.59 -0.4 849,079 - LU632_RS04265 0.59 -2.6 849,162 - LU632_RS04265 0.65 -2.4 849,224 - LU632_RS04265 0.69 -3.0 849,263 - LU632_RS04265 0.72 -2.4 849,263 - LU632_RS04265 0.72 -2.9 849,300 - LU632_RS04265 0.74 -0.6 849,307 - LU632_RS04265 0.75 -0.5 849,310 + LU632_RS04265 0.75 -1.1 849,311 - LU632_RS04265 0.75 -1.5 849,337 - LU632_RS04265 0.77 -1.1 849,337 - LU632_RS04265 0.77 -0.5 849,337 - LU632_RS04265 0.77 -2.8 849,379 - LU632_RS04265 0.80 -1.2 849,673 - +1.4 849,876 - ulaD LU632_RS04270 0.30 -4.2 850,090 - ulaD LU632_RS04270 0.62 -1.6 850,235 - ulaD LU632_RS04270 0.84 -2.3 850,241 - ulaD LU632_RS04270 0.85 -0.9 850,241 - ulaD LU632_RS04270 0.85 -3.6 850,241 - ulaD LU632_RS04270 0.85 -3.4 850,268 + ulaD LU632_RS04270 0.89 +0.3 850,325 + -0.4 850,337 - -2.0 850,338 + -0.4 850,338 + +0.8 850,338 + -3.5 850,339 - -1.1 850,339 - -0.6 850,339 - +1.6 850,339 - -0.2 850,365 + -1.4 850,365 + -2.0 850,366 - -2.8 850,366 - -0.9 850,368 - -3.5 850,368 - -1.0 850,368 - -1.7 850,455 + LU632_RS04275 0.13 +1.3 850,548 + LU632_RS04275 0.24 +0.2 850,592 - LU632_RS04275 0.29 -0.8 850,622 + LU632_RS04275 0.33 -2.1 850,701 - LU632_RS04275 0.42 -1.7 850,701 - LU632_RS04275 0.42 -0.9 850,703 + LU632_RS04275 0.42 -2.6 850,819 + LU632_RS04275 0.55 +1.1 850,834 + LU632_RS04275 0.57 -1.5 850,834 + LU632_RS04275 0.57 -1.8 850,881 + LU632_RS04275 0.63 -2.3 850,882 - LU632_RS04275 0.63 -1.7 850,882 - LU632_RS04275 0.63 -1.3 851,256 + -4.8 851,256 + -2.8 851,257 - -2.6 851,257 - -3.3
Or see this region's nucleotide sequence