Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04130 and LU632_RS04135 are separated by 52 nucleotides LU632_RS04135 and LU632_RS04140 overlap by 7 nucleotides LU632_RS04140 and istA are separated by 231 nucleotides istA and istB are separated by 10 nucleotides
LU632_RS04130: LU632_RS04130 - type IV toxin-antitoxin system YeeU family antitoxin, at 819,873 to 820,232
_RS04130
LU632_RS04135: LU632_RS04135 - toxin, at 820,285 to 820,461
_RS04135
LU632_RS04140: LU632_RS04140 - terminase family protein, at 820,455 to 820,766
_RS04140
LU632_RS04145: istA - IS21 family transposase, at 820,998 to 822,527
istA
LU632_RS04150: istB - IS21-like element helper ATPase IstB, at 822,538 to 823,281
istB
Position (kb) 820
821
822
823 Strain fitness (log2 ratio) -1
0
1
2 at 820.010 kb on + strand, within LU632_RS04130 at 820.010 kb on + strand, within LU632_RS04130 at 820.011 kb on - strand, within LU632_RS04130 at 820.011 kb on - strand, within LU632_RS04130 at 820.140 kb on + strand, within LU632_RS04130 at 820.140 kb on + strand, within LU632_RS04130 at 820.140 kb on + strand, within LU632_RS04130 at 820.141 kb on - strand, within LU632_RS04130 at 820.191 kb on - strand, within LU632_RS04130 at 820.194 kb on + strand, within LU632_RS04130 at 820.195 kb on - strand, within LU632_RS04130 at 820.253 kb on + strand at 820.254 kb on - strand at 820.292 kb on + strand at 820.292 kb on + strand at 820.354 kb on - strand, within LU632_RS04135 at 820.375 kb on - strand, within LU632_RS04135 at 820.446 kb on + strand at 820.455 kb on - strand at 820.496 kb on + strand, within LU632_RS04140 at 820.694 kb on - strand, within LU632_RS04140 at 821.527 kb on - strand, within istA at 822.988 kb on + strand, within istB at 823.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 820,010 + LU632_RS04130 0.38 -0.3 820,010 + LU632_RS04130 0.38 +0.1 820,011 - LU632_RS04130 0.38 -1.1 820,011 - LU632_RS04130 0.38 +0.3 820,140 + LU632_RS04130 0.74 +0.2 820,140 + LU632_RS04130 0.74 +0.9 820,140 + LU632_RS04130 0.74 +1.6 820,141 - LU632_RS04130 0.74 +0.8 820,191 - LU632_RS04130 0.88 -0.3 820,194 + LU632_RS04130 0.89 -1.7 820,195 - LU632_RS04130 0.89 +0.3 820,253 + -0.7 820,254 - -1.2 820,292 + -0.5 820,292 + -0.1 820,354 - LU632_RS04135 0.39 +1.1 820,375 - LU632_RS04135 0.51 -0.6 820,446 + -0.8 820,455 - -1.5 820,496 + LU632_RS04140 0.13 -1.6 820,694 - LU632_RS04140 0.77 +1.8 821,527 - istA LU632_RS04145 0.35 +1.3 822,988 + istB LU632_RS04150 0.60 -1.0 823,392 - +0.2
Or see this region's nucleotide sequence