Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04105 and LU632_RS04110 are separated by 123 nucleotides LU632_RS04110 and LU632_RS04115 are separated by 37 nucleotides LU632_RS04115 and radC are separated by 11 nucleotides
LU632_RS04105: LU632_RS04105 - hypothetical protein, at 816,722 to 817,663
_RS04105
LU632_RS04110: LU632_RS04110 - DUF945 domain-containing protein, at 817,787 to 818,608
_RS04110
LU632_RS04115: LU632_RS04115 - antirestriction protein, at 818,646 to 819,125
_RS04115
LU632_RS04120: radC - DNA repair protein RadC, at 819,137 to 819,616
radC
Position (kb) 817
818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 816.856 kb on + strand, within LU632_RS04105 at 816.857 kb on - strand, within LU632_RS04105 at 816.900 kb on - strand, within LU632_RS04105 at 817.082 kb on + strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.133 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.204 kb on - strand, within LU632_RS04105 at 817.204 kb on - strand, within LU632_RS04105 at 817.373 kb on + strand, within LU632_RS04105 at 817.373 kb on + strand, within LU632_RS04105 at 817.374 kb on - strand, within LU632_RS04105 at 817.374 kb on - strand, within LU632_RS04105 at 817.393 kb on + strand, within LU632_RS04105 at 817.405 kb on + strand, within LU632_RS04105 at 817.405 kb on + strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.463 kb on + strand, within LU632_RS04105 at 817.527 kb on - strand, within LU632_RS04105 at 817.553 kb on - strand, within LU632_RS04105 at 817.553 kb on - strand, within LU632_RS04105 at 817.564 kb on - strand, within LU632_RS04105 at 817.634 kb on - strand at 817.639 kb on - strand at 817.712 kb on + strand at 817.712 kb on + strand at 817.718 kb on + strand at 817.782 kb on + strand at 817.783 kb on - strand at 817.783 kb on - strand at 817.936 kb on + strand, within LU632_RS04110 at 817.936 kb on + strand, within LU632_RS04110 at 818.127 kb on + strand, within LU632_RS04110 at 818.128 kb on - strand, within LU632_RS04110 at 818.243 kb on + strand, within LU632_RS04110 at 818.244 kb on - strand, within LU632_RS04110 at 818.308 kb on - strand, within LU632_RS04110 at 818.506 kb on + strand, within LU632_RS04110 at 818.535 kb on + strand at 818.535 kb on + strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.585 kb on - strand at 818.585 kb on - strand at 818.602 kb on + strand at 818.625 kb on - strand at 818.716 kb on + strand, within LU632_RS04115 at 818.807 kb on + strand, within LU632_RS04115 at 818.921 kb on + strand, within LU632_RS04115 at 818.922 kb on - strand, within LU632_RS04115 at 818.922 kb on - strand, within LU632_RS04115 at 818.922 kb on - strand, within LU632_RS04115 at 818.926 kb on + strand, within LU632_RS04115 at 819.007 kb on + strand, within LU632_RS04115 at 819.007 kb on + strand, within LU632_RS04115 at 819.057 kb on + strand, within LU632_RS04115 at 819.057 kb on + strand, within LU632_RS04115 at 819.057 kb on + strand, within LU632_RS04115 at 819.156 kb on + strand at 819.171 kb on + strand at 819.228 kb on + strand, within radC at 819.229 kb on - strand, within radC at 819.352 kb on + strand, within radC at 819.353 kb on - strand, within radC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 816,856 + LU632_RS04105 0.14 +3.2 816,857 - LU632_RS04105 0.14 -1.0 816,900 - LU632_RS04105 0.19 -1.7 817,082 + LU632_RS04105 0.38 +0.1 817,098 - LU632_RS04105 0.40 +0.4 817,098 - LU632_RS04105 0.40 +1.2 817,098 - LU632_RS04105 0.40 +2.2 817,133 + LU632_RS04105 0.44 -0.4 817,203 + LU632_RS04105 0.51 -0.3 817,203 + LU632_RS04105 0.51 +3.2 817,203 + LU632_RS04105 0.51 -0.2 817,203 + LU632_RS04105 0.51 +0.6 817,203 + LU632_RS04105 0.51 -1.2 817,204 - LU632_RS04105 0.51 -1.4 817,204 - LU632_RS04105 0.51 -0.5 817,373 + LU632_RS04105 0.69 +2.2 817,373 + LU632_RS04105 0.69 -0.2 817,374 - LU632_RS04105 0.69 -0.8 817,374 - LU632_RS04105 0.69 -3.4 817,393 + LU632_RS04105 0.71 +1.0 817,405 + LU632_RS04105 0.73 -1.0 817,405 + LU632_RS04105 0.73 +2.2 817,406 - LU632_RS04105 0.73 -0.9 817,406 - LU632_RS04105 0.73 +2.5 817,406 - LU632_RS04105 0.73 -1.2 817,463 + LU632_RS04105 0.79 -3.1 817,527 - LU632_RS04105 0.85 -0.6 817,553 - LU632_RS04105 0.88 -1.1 817,553 - LU632_RS04105 0.88 +1.6 817,564 - LU632_RS04105 0.89 +0.7 817,634 - -1.3 817,639 - -2.1 817,712 + +1.7 817,712 + +0.6 817,718 + +1.0 817,782 + -1.4 817,783 - +0.2 817,783 - -0.4 817,936 + LU632_RS04110 0.18 -0.1 817,936 + LU632_RS04110 0.18 -0.7 818,127 + LU632_RS04110 0.41 -2.8 818,128 - LU632_RS04110 0.41 +1.5 818,243 + LU632_RS04110 0.55 -0.1 818,244 - LU632_RS04110 0.56 -1.7 818,308 - LU632_RS04110 0.63 +0.7 818,506 + LU632_RS04110 0.87 +0.8 818,535 + -0.3 818,535 + -1.1 818,536 - -1.2 818,536 - +0.2 818,536 - +0.6 818,536 - -1.1 818,585 - -0.4 818,585 - -2.6 818,602 + +0.1 818,625 - -0.4 818,716 + LU632_RS04115 0.15 -0.6 818,807 + LU632_RS04115 0.34 +0.0 818,921 + LU632_RS04115 0.57 +0.6 818,922 - LU632_RS04115 0.57 -1.0 818,922 - LU632_RS04115 0.57 -1.0 818,922 - LU632_RS04115 0.57 +2.2 818,926 + LU632_RS04115 0.58 +1.4 819,007 + LU632_RS04115 0.75 -2.3 819,007 + LU632_RS04115 0.75 +1.5 819,057 + LU632_RS04115 0.86 +0.2 819,057 + LU632_RS04115 0.86 -0.6 819,057 + LU632_RS04115 0.86 +3.1 819,156 + -0.1 819,171 + +0.1 819,228 + radC LU632_RS04120 0.19 +0.3 819,229 - radC LU632_RS04120 0.19 -1.9 819,352 + radC LU632_RS04120 0.45 +2.2 819,353 - radC LU632_RS04120 0.45 +2.6
Or see this region's nucleotide sequence