Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04090 and LU632_RS04095 are separated by 37 nucleotides LU632_RS04095 and LU632_RS04100 overlap by 82 nucleotides LU632_RS04100 and LU632_RS04105 are separated by 127 nucleotides
LU632_RS04090: LU632_RS04090 - IS3 family transposase, at 815,090 to 815,859
_RS04090
LU632_RS04095: LU632_RS04095 - IS1 family transposase, at 815,897 to 816,400
_RS04095
LU632_RS04100: LU632_RS04100 - IS1-like element transposase, at 816,319 to 816,594
_RS04100
LU632_RS04105: LU632_RS04105 - hypothetical protein, at 816,722 to 817,663
_RS04105
Position (kb) 816
817 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 815.332 kb on - strand, within LU632_RS04090 at 815.429 kb on - strand, within LU632_RS04090 at 815.491 kb on + strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.588 kb on - strand, within LU632_RS04090 at 815.690 kb on + strand, within LU632_RS04090 at 815.755 kb on - strand, within LU632_RS04090 at 815.828 kb on + strand at 815.828 kb on + strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand at 816.619 kb on + strand at 816.651 kb on + strand at 816.652 kb on - strand at 816.654 kb on + strand at 816.654 kb on + strand at 816.655 kb on - strand at 816.655 kb on - strand at 816.655 kb on - strand at 816.756 kb on + strand at 816.779 kb on - strand at 816.856 kb on + strand, within LU632_RS04105 at 816.857 kb on - strand, within LU632_RS04105 at 816.900 kb on - strand, within LU632_RS04105 at 817.082 kb on + strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.133 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.204 kb on - strand, within LU632_RS04105 at 817.204 kb on - strand, within LU632_RS04105 at 817.373 kb on + strand, within LU632_RS04105 at 817.373 kb on + strand, within LU632_RS04105 at 817.374 kb on - strand, within LU632_RS04105 at 817.374 kb on - strand, within LU632_RS04105 at 817.393 kb on + strand, within LU632_RS04105 at 817.405 kb on + strand, within LU632_RS04105 at 817.405 kb on + strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.463 kb on + strand, within LU632_RS04105 at 817.527 kb on - strand, within LU632_RS04105 at 817.553 kb on - strand, within LU632_RS04105 at 817.553 kb on - strand, within LU632_RS04105 at 817.564 kb on - strand, within LU632_RS04105
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 815,332 - LU632_RS04090 0.31 -0.8 815,429 - LU632_RS04090 0.44 -0.1 815,491 + LU632_RS04090 0.52 +0.8 815,517 - LU632_RS04090 0.55 -0.4 815,517 - LU632_RS04090 0.55 -0.0 815,517 - LU632_RS04090 0.55 -0.6 815,580 + LU632_RS04090 0.64 -1.4 815,580 + LU632_RS04090 0.64 -0.3 815,580 + LU632_RS04090 0.64 -0.0 815,588 - LU632_RS04090 0.65 -0.9 815,690 + LU632_RS04090 0.78 -0.6 815,755 - LU632_RS04090 0.86 -0.1 815,828 + -0.8 815,828 + -0.4 815,829 - -0.8 815,829 - +0.6 815,829 - -1.4 815,829 - -1.9 816,619 + -1.3 816,651 + +0.4 816,652 - -0.3 816,654 + +0.6 816,654 + -0.7 816,655 - -0.2 816,655 - +0.4 816,655 - -0.6 816,756 + -0.9 816,779 - -0.8 816,856 + LU632_RS04105 0.14 +3.2 816,857 - LU632_RS04105 0.14 -1.0 816,900 - LU632_RS04105 0.19 -1.7 817,082 + LU632_RS04105 0.38 +0.1 817,098 - LU632_RS04105 0.40 +0.4 817,098 - LU632_RS04105 0.40 +1.2 817,098 - LU632_RS04105 0.40 +2.2 817,133 + LU632_RS04105 0.44 -0.4 817,203 + LU632_RS04105 0.51 -0.3 817,203 + LU632_RS04105 0.51 +3.2 817,203 + LU632_RS04105 0.51 -0.2 817,203 + LU632_RS04105 0.51 +0.6 817,203 + LU632_RS04105 0.51 -1.2 817,204 - LU632_RS04105 0.51 -1.4 817,204 - LU632_RS04105 0.51 -0.5 817,373 + LU632_RS04105 0.69 +2.2 817,373 + LU632_RS04105 0.69 -0.2 817,374 - LU632_RS04105 0.69 -0.8 817,374 - LU632_RS04105 0.69 -3.4 817,393 + LU632_RS04105 0.71 +1.0 817,405 + LU632_RS04105 0.73 -1.0 817,405 + LU632_RS04105 0.73 +2.2 817,406 - LU632_RS04105 0.73 -0.9 817,406 - LU632_RS04105 0.73 +2.5 817,406 - LU632_RS04105 0.73 -1.2 817,463 + LU632_RS04105 0.79 -3.1 817,527 - LU632_RS04105 0.85 -0.6 817,553 - LU632_RS04105 0.88 -1.1 817,553 - LU632_RS04105 0.88 +1.6 817,564 - LU632_RS04105 0.89 +0.7
Or see this region's nucleotide sequence