Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04080 and LU632_RS04085 are separated by 209 nucleotides LU632_RS04085 and LU632_RS04090 are separated by 221 nucleotides LU632_RS04090 and LU632_RS04095 are separated by 37 nucleotides LU632_RS04095 and LU632_RS04100 overlap by 82 nucleotides LU632_RS04100 and LU632_RS04105 are separated by 127 nucleotides
LU632_RS04080: LU632_RS04080 - IS256 family transposase, at 813,174 to 814,308
_RS04080
LU632_RS04085: LU632_RS04085 - hypothetical protein, at 814,518 to 814,868
_RS04085
LU632_RS04090: LU632_RS04090 - IS3 family transposase, at 815,090 to 815,859
_RS04090
LU632_RS04095: LU632_RS04095 - IS1 family transposase, at 815,897 to 816,400
_RS04095
LU632_RS04100: LU632_RS04100 - IS1-like element transposase, at 816,319 to 816,594
_RS04100
LU632_RS04105: LU632_RS04105 - hypothetical protein, at 816,722 to 817,663
_RS04105
Position (kb) 815
816 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 814.383 kb on + strand at 814.477 kb on + strand at 814.519 kb on + strand at 814.606 kb on - strand, within LU632_RS04085 at 814.606 kb on - strand, within LU632_RS04085 at 814.696 kb on + strand, within LU632_RS04085 at 814.849 kb on - strand at 814.850 kb on + strand at 814.851 kb on - strand at 814.870 kb on + strand at 814.871 kb on - strand at 814.886 kb on - strand at 814.912 kb on + strand at 814.915 kb on + strand at 814.916 kb on - strand at 814.935 kb on + strand at 814.956 kb on + strand at 815.074 kb on + strand at 815.163 kb on + strand at 815.178 kb on + strand, within LU632_RS04090 at 815.178 kb on + strand, within LU632_RS04090 at 815.179 kb on - strand, within LU632_RS04090 at 815.182 kb on + strand, within LU632_RS04090 at 815.182 kb on + strand, within LU632_RS04090 at 815.182 kb on + strand, within LU632_RS04090 at 815.183 kb on - strand, within LU632_RS04090 at 815.183 kb on - strand, within LU632_RS04090 at 815.233 kb on + strand, within LU632_RS04090 at 815.294 kb on - strand, within LU632_RS04090 at 815.332 kb on - strand, within LU632_RS04090 at 815.429 kb on - strand, within LU632_RS04090 at 815.491 kb on + strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.588 kb on - strand, within LU632_RS04090 at 815.690 kb on + strand, within LU632_RS04090 at 815.755 kb on - strand, within LU632_RS04090 at 815.828 kb on + strand at 815.828 kb on + strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand at 816.619 kb on + strand at 816.651 kb on + strand at 816.652 kb on - strand at 816.654 kb on + strand at 816.654 kb on + strand at 816.655 kb on - strand at 816.655 kb on - strand at 816.655 kb on - strand at 816.756 kb on + strand at 816.779 kb on - strand at 816.856 kb on + strand, within LU632_RS04105 at 816.857 kb on - strand, within LU632_RS04105
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 814,383 + -0.4 814,477 + -0.7 814,519 + -1.4 814,606 - LU632_RS04085 0.25 -1.4 814,606 - LU632_RS04085 0.25 -0.2 814,696 + LU632_RS04085 0.51 -1.0 814,849 - -0.4 814,850 + +0.4 814,851 - +1.1 814,870 + +1.0 814,871 - +1.5 814,886 - -0.7 814,912 + -0.3 814,915 + +1.2 814,916 - +0.1 814,935 + -0.1 814,956 + -2.5 815,074 + +0.5 815,163 + +1.0 815,178 + LU632_RS04090 0.11 +0.3 815,178 + LU632_RS04090 0.11 +0.2 815,179 - LU632_RS04090 0.12 +3.0 815,182 + LU632_RS04090 0.12 +0.1 815,182 + LU632_RS04090 0.12 -1.3 815,182 + LU632_RS04090 0.12 +1.6 815,183 - LU632_RS04090 0.12 +1.4 815,183 - LU632_RS04090 0.12 -0.7 815,233 + LU632_RS04090 0.19 +0.4 815,294 - LU632_RS04090 0.26 -2.6 815,332 - LU632_RS04090 0.31 -0.8 815,429 - LU632_RS04090 0.44 -0.1 815,491 + LU632_RS04090 0.52 +0.8 815,517 - LU632_RS04090 0.55 -0.4 815,517 - LU632_RS04090 0.55 -0.0 815,517 - LU632_RS04090 0.55 -0.6 815,580 + LU632_RS04090 0.64 -1.4 815,580 + LU632_RS04090 0.64 -0.3 815,580 + LU632_RS04090 0.64 -0.0 815,588 - LU632_RS04090 0.65 -0.9 815,690 + LU632_RS04090 0.78 -0.6 815,755 - LU632_RS04090 0.86 -0.1 815,828 + -0.8 815,828 + -0.4 815,829 - -0.8 815,829 - +0.6 815,829 - -1.4 815,829 - -1.9 816,619 + -1.3 816,651 + +0.4 816,652 - -0.3 816,654 + +0.6 816,654 + -0.7 816,655 - -0.2 816,655 - +0.4 816,655 - -0.6 816,756 + -0.9 816,779 - -0.8 816,856 + LU632_RS04105 0.14 +3.2 816,857 - LU632_RS04105 0.14 -1.0
Or see this region's nucleotide sequence