Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03910

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntvgrG and LU632_RS03905 overlap by 4 nucleotidesLU632_RS03905 and LU632_RS03910 are separated by 3 nucleotidesLU632_RS03910 and LU632_RS03915 are separated by 161 nucleotidesLU632_RS03915 and LU632_RS03920 overlap by 4 nucleotides LU632_RS03900: vgrG - type VI secretion system tip protein VgrG, at 781,439 to 783,370 vgrG LU632_RS03905: LU632_RS03905 - DUF1795 domain-containing protein, at 783,367 to 783,798 _RS03905 LU632_RS03910: LU632_RS03910 - DUF6531 domain-containing protein, at 783,802 to 787,896 _RS03910 LU632_RS03915: LU632_RS03915 - HNH/ENDO VII family nuclease, at 788,058 to 788,339 _RS03915 LU632_RS03920: LU632_RS03920 - SMI1/KNR4 family protein, at 788,336 to 788,767 _RS03920 Position (kb) 783 784 785 786 787 788Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 782.954 kb on - strand, within vgrGat 783.093 kb on - strand, within vgrGat 783.271 kb on + strandat 783.347 kb on - strandat 783.520 kb on + strand, within LU632_RS03905at 783.521 kb on - strand, within LU632_RS03905at 783.895 kb on + strandat 783.908 kb on + strandat 783.966 kb on - strandat 784.105 kb on - strandat 784.105 kb on - strandat 784.324 kb on + strand, within LU632_RS03910at 784.337 kb on + strand, within LU632_RS03910at 784.338 kb on - strand, within LU632_RS03910at 784.401 kb on + strand, within LU632_RS03910at 784.404 kb on + strand, within LU632_RS03910at 784.405 kb on - strand, within LU632_RS03910at 784.892 kb on - strand, within LU632_RS03910at 785.086 kb on + strand, within LU632_RS03910at 785.112 kb on + strand, within LU632_RS03910at 785.252 kb on + strand, within LU632_RS03910at 785.290 kb on + strand, within LU632_RS03910at 785.321 kb on + strand, within LU632_RS03910at 785.368 kb on + strand, within LU632_RS03910at 785.368 kb on + strand, within LU632_RS03910at 785.369 kb on - strand, within LU632_RS03910at 785.494 kb on + strand, within LU632_RS03910at 785.622 kb on - strand, within LU632_RS03910at 785.695 kb on + strand, within LU632_RS03910at 785.695 kb on + strand, within LU632_RS03910at 785.695 kb on + strand, within LU632_RS03910at 785.695 kb on + strand, within LU632_RS03910at 785.695 kb on + strand, within LU632_RS03910at 785.695 kb on + strand, within LU632_RS03910at 785.695 kb on + strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.696 kb on - strand, within LU632_RS03910at 785.786 kb on - strand, within LU632_RS03910at 785.909 kb on - strand, within LU632_RS03910at 785.915 kb on - strand, within LU632_RS03910at 785.915 kb on - strand, within LU632_RS03910at 785.915 kb on - strand, within LU632_RS03910at 786.229 kb on + strand, within LU632_RS03910at 786.229 kb on + strand, within LU632_RS03910at 786.230 kb on - strand, within LU632_RS03910at 786.349 kb on + strand, within LU632_RS03910at 786.350 kb on - strand, within LU632_RS03910at 786.350 kb on - strand, within LU632_RS03910at 786.350 kb on - strand, within LU632_RS03910at 786.372 kb on + strand, within LU632_RS03910at 786.372 kb on + strand, within LU632_RS03910at 786.373 kb on - strand, within LU632_RS03910at 786.385 kb on - strand, within LU632_RS03910at 786.562 kb on + strand, within LU632_RS03910at 786.568 kb on + strand, within LU632_RS03910at 786.569 kb on - strand, within LU632_RS03910at 786.622 kb on + strand, within LU632_RS03910at 786.622 kb on + strand, within LU632_RS03910at 786.729 kb on + strand, within LU632_RS03910at 786.730 kb on - strand, within LU632_RS03910at 786.730 kb on - strand, within LU632_RS03910at 786.730 kb on - strand, within LU632_RS03910at 786.861 kb on + strand, within LU632_RS03910at 786.862 kb on - strand, within LU632_RS03910at 787.348 kb on + strand, within LU632_RS03910at 787.348 kb on + strand, within LU632_RS03910at 787.414 kb on + strand, within LU632_RS03910at 787.447 kb on - strand, within LU632_RS03910at 787.447 kb on - strand, within LU632_RS03910at 787.556 kb on - strandat 787.630 kb on + strandat 787.819 kb on + strandat 787.819 kb on + strandat 787.821 kb on + strandat 787.821 kb on + strandat 787.822 kb on - strandat 787.837 kb on + strandat 787.838 kb on - strandat 787.859 kb on - strandat 787.903 kb on - strandat 787.903 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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782,954 - vgrG LU632_RS03900 0.78 +0.2
783,093 - vgrG LU632_RS03900 0.86 -0.8
783,271 + -1.4
783,347 - -1.3
783,520 + LU632_RS03905 0.35 +1.3
783,521 - LU632_RS03905 0.36 -0.8
783,895 + -1.3
783,908 + +0.7
783,966 - -0.3
784,105 - -0.4
784,105 - +0.0
784,324 + LU632_RS03910 0.13 +0.8
784,337 + LU632_RS03910 0.13 -1.5
784,338 - LU632_RS03910 0.13 -2.4
784,401 + LU632_RS03910 0.15 -0.8
784,404 + LU632_RS03910 0.15 +0.6
784,405 - LU632_RS03910 0.15 -1.0
784,892 - LU632_RS03910 0.27 -0.6
785,086 + LU632_RS03910 0.31 -1.4
785,112 + LU632_RS03910 0.32 +0.6
785,252 + LU632_RS03910 0.35 -1.1
785,290 + LU632_RS03910 0.36 -1.7
785,321 + LU632_RS03910 0.37 -0.6
785,368 + LU632_RS03910 0.38 -1.8
785,368 + LU632_RS03910 0.38 -0.3
785,369 - LU632_RS03910 0.38 -0.1
785,494 + LU632_RS03910 0.41 -0.4
785,622 - LU632_RS03910 0.44 -1.0
785,695 + LU632_RS03910 0.46 +0.3
785,695 + LU632_RS03910 0.46 +0.7
785,695 + LU632_RS03910 0.46 -0.1
785,695 + LU632_RS03910 0.46 -0.0
785,695 + LU632_RS03910 0.46 -2.2
785,695 + LU632_RS03910 0.46 -1.5
785,695 + LU632_RS03910 0.46 -1.6
785,696 - LU632_RS03910 0.46 -0.3
785,696 - LU632_RS03910 0.46 -1.5
785,696 - LU632_RS03910 0.46 +0.1
785,696 - LU632_RS03910 0.46 +3.2
785,696 - LU632_RS03910 0.46 +1.4
785,696 - LU632_RS03910 0.46 -0.1
785,696 - LU632_RS03910 0.46 -0.9
785,696 - LU632_RS03910 0.46 -0.1
785,696 - LU632_RS03910 0.46 -1.9
785,696 - LU632_RS03910 0.46 -0.1
785,696 - LU632_RS03910 0.46 +0.1
785,696 - LU632_RS03910 0.46 -0.5
785,696 - LU632_RS03910 0.46 -0.2
785,696 - LU632_RS03910 0.46 +1.5
785,696 - LU632_RS03910 0.46 +0.0
785,696 - LU632_RS03910 0.46 -1.0
785,786 - LU632_RS03910 0.48 -0.2
785,909 - LU632_RS03910 0.51 -0.6
785,915 - LU632_RS03910 0.52 -2.0
785,915 - LU632_RS03910 0.52 -0.6
785,915 - LU632_RS03910 0.52 +1.4
786,229 + LU632_RS03910 0.59 -2.9
786,229 + LU632_RS03910 0.59 -0.7
786,230 - LU632_RS03910 0.59 +0.5
786,349 + LU632_RS03910 0.62 -0.0
786,350 - LU632_RS03910 0.62 -1.5
786,350 - LU632_RS03910 0.62 -0.8
786,350 - LU632_RS03910 0.62 +0.9
786,372 + LU632_RS03910 0.63 -1.2
786,372 + LU632_RS03910 0.63 -0.8
786,373 - LU632_RS03910 0.63 +0.0
786,385 - LU632_RS03910 0.63 -0.2
786,562 + LU632_RS03910 0.67 -0.5
786,568 + LU632_RS03910 0.68 -1.6
786,569 - LU632_RS03910 0.68 -1.9
786,622 + LU632_RS03910 0.69 -1.9
786,622 + LU632_RS03910 0.69 -0.1
786,729 + LU632_RS03910 0.71 +1.6
786,730 - LU632_RS03910 0.72 +2.2
786,730 - LU632_RS03910 0.72 -2.1
786,730 - LU632_RS03910 0.72 +0.4
786,861 + LU632_RS03910 0.75 -1.1
786,862 - LU632_RS03910 0.75 +0.5
787,348 + LU632_RS03910 0.87 -1.1
787,348 + LU632_RS03910 0.87 -0.9
787,414 + LU632_RS03910 0.88 -0.2
787,447 - LU632_RS03910 0.89 -0.1
787,447 - LU632_RS03910 0.89 -0.6
787,556 - -2.5
787,630 + +0.1
787,819 + -2.0
787,819 + -0.2
787,821 + -2.0
787,821 + -0.6
787,822 - +1.4
787,837 + -0.3
787,838 - -1.0
787,859 - -2.8
787,903 - +2.2
787,903 - -2.4

Or see this region's nucleotide sequence