Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03825 and LU632_RS03830 overlap by 82 nucleotides LU632_RS03830 and LU632_RS03835 are separated by 150 nucleotides LU632_RS03835 and tagH are separated by 256 nucleotides tagH and LU632_RS03845 overlap by 1 nucleotides LU632_RS03845 and LU632_RS03850 are separated by 18 nucleotides
LU632_RS03825: LU632_RS03825 - IS1 family transposase, at 763,329 to 763,832
_RS03825
LU632_RS03830: LU632_RS03830 - transposase, at 763,751 to 764,026
_RS03830
LU632_RS03835: LU632_RS03835 - hypothetical protein, at 764,177 to 764,452
_RS03835
LU632_RS03840: tagH - type VI secretion system-associated FHA domain protein TagH, at 764,709 to 766,553
tagH
LU632_RS03845: LU632_RS03845 - protein phosphatase 2C domain-containing protein, at 766,553 to 767,347
_RS03845
LU632_RS03850: LU632_RS03850 - hypothetical protein, at 767,366 to 768,418
_RS03850
Position (kb) 764
765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 764.051 kb on + strand at 764.051 kb on + strand at 764.097 kb on - strand at 764.106 kb on - strand at 764.106 kb on - strand at 764.141 kb on + strand at 764.144 kb on - strand at 764.176 kb on - strand at 764.176 kb on - strand at 764.186 kb on - strand at 764.230 kb on + strand, within LU632_RS03835 at 764.230 kb on + strand, within LU632_RS03835 at 764.284 kb on + strand, within LU632_RS03835 at 764.289 kb on - strand, within LU632_RS03835 at 764.340 kb on + strand, within LU632_RS03835 at 764.341 kb on - strand, within LU632_RS03835 at 764.341 kb on - strand, within LU632_RS03835 at 764.345 kb on - strand, within LU632_RS03835 at 764.372 kb on - strand, within LU632_RS03835 at 764.372 kb on - strand, within LU632_RS03835 at 764.372 kb on - strand, within LU632_RS03835 at 764.445 kb on + strand at 764.445 kb on + strand at 764.450 kb on + strand at 764.454 kb on + strand at 764.454 kb on + strand at 764.517 kb on + strand at 764.517 kb on + strand at 764.518 kb on - strand at 764.520 kb on + strand at 764.551 kb on - strand at 764.718 kb on - strand at 764.810 kb on + strand at 764.810 kb on + strand at 764.810 kb on + strand at 764.837 kb on + strand at 764.921 kb on - strand, within tagH at 764.921 kb on - strand, within tagH at 764.933 kb on + strand, within tagH at 764.933 kb on + strand, within tagH at 764.934 kb on - strand, within tagH at 765.588 kb on + strand, within tagH at 765.589 kb on - strand, within tagH at 765.620 kb on + strand, within tagH at 765.620 kb on + strand, within tagH at 765.620 kb on + strand, within tagH at 765.621 kb on - strand, within tagH at 765.812 kb on + strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 766.050 kb on - strand, within tagH at 766.050 kb on - strand, within tagH at 766.050 kb on - strand, within tagH at 766.238 kb on - strand, within tagH at 766.339 kb on + strand, within tagH at 766.500 kb on + strand at 766.558 kb on + strand at 766.559 kb on - strand at 766.601 kb on - strand at 766.871 kb on + strand, within LU632_RS03845 at 766.913 kb on + strand, within LU632_RS03845 at 766.914 kb on - strand, within LU632_RS03845 at 766.932 kb on - strand, within LU632_RS03845 at 767.021 kb on + strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.165 kb on - strand, within LU632_RS03845 at 767.171 kb on - strand, within LU632_RS03845 at 767.253 kb on - strand, within LU632_RS03845 at 767.346 kb on - strand at 767.365 kb on + strand at 767.365 kb on + strand at 767.372 kb on + strand at 767.372 kb on + strand at 767.373 kb on - strand at 767.401 kb on + strand at 767.402 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 764,051 + +0.5 764,051 + -1.2 764,097 - +1.5 764,106 - +1.8 764,106 - +1.2 764,141 + -3.6 764,144 - -0.9 764,176 - +4.2 764,176 - +1.2 764,186 - +2.3 764,230 + LU632_RS03835 0.19 -0.3 764,230 + LU632_RS03835 0.19 -1.1 764,284 + LU632_RS03835 0.39 -1.2 764,289 - LU632_RS03835 0.41 +4.2 764,340 + LU632_RS03835 0.59 -1.3 764,341 - LU632_RS03835 0.59 +1.0 764,341 - LU632_RS03835 0.59 +1.4 764,345 - LU632_RS03835 0.61 +0.7 764,372 - LU632_RS03835 0.71 +1.8 764,372 - LU632_RS03835 0.71 +1.0 764,372 - LU632_RS03835 0.71 +2.1 764,445 + +0.4 764,445 + -0.1 764,450 + +2.7 764,454 + -1.3 764,454 + -1.4 764,517 + -0.5 764,517 + +0.3 764,518 - -2.6 764,520 + -0.1 764,551 - -0.5 764,718 - +1.0 764,810 + -2.2 764,810 + -1.3 764,810 + +1.1 764,837 + -1.1 764,921 - tagH LU632_RS03840 0.11 +2.2 764,921 - tagH LU632_RS03840 0.11 -0.1 764,933 + tagH LU632_RS03840 0.12 +1.4 764,933 + tagH LU632_RS03840 0.12 +1.5 764,934 - tagH LU632_RS03840 0.12 +2.0 765,588 + tagH LU632_RS03840 0.48 +0.3 765,589 - tagH LU632_RS03840 0.48 +1.3 765,620 + tagH LU632_RS03840 0.49 +0.9 765,620 + tagH LU632_RS03840 0.49 -0.6 765,620 + tagH LU632_RS03840 0.49 -2.5 765,621 - tagH LU632_RS03840 0.49 +1.0 765,812 + tagH LU632_RS03840 0.60 -1.2 765,813 - tagH LU632_RS03840 0.60 +2.3 765,813 - tagH LU632_RS03840 0.60 +2.5 765,813 - tagH LU632_RS03840 0.60 +1.9 765,813 - tagH LU632_RS03840 0.60 +2.2 765,813 - tagH LU632_RS03840 0.60 -0.3 766,050 - tagH LU632_RS03840 0.73 +0.8 766,050 - tagH LU632_RS03840 0.73 +2.7 766,050 - tagH LU632_RS03840 0.73 -1.4 766,238 - tagH LU632_RS03840 0.83 +2.4 766,339 + tagH LU632_RS03840 0.88 -0.9 766,500 + -1.3 766,558 + -2.0 766,559 - +0.9 766,601 - +1.0 766,871 + LU632_RS03845 0.40 -1.1 766,913 + LU632_RS03845 0.45 -2.9 766,914 - LU632_RS03845 0.45 +3.8 766,932 - LU632_RS03845 0.48 +0.8 767,021 + LU632_RS03845 0.59 +1.3 767,147 - LU632_RS03845 0.75 +0.9 767,147 - LU632_RS03845 0.75 -0.6 767,147 - LU632_RS03845 0.75 -0.7 767,165 - LU632_RS03845 0.77 -0.3 767,171 - LU632_RS03845 0.78 +0.2 767,253 - LU632_RS03845 0.88 -0.7 767,346 - +0.3 767,365 + -0.1 767,365 + +1.4 767,372 + +1.8 767,372 + -0.0 767,373 - +2.3 767,401 + +1.1 767,402 - +1.6
Or see this region's nucleotide sequence