Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03770 and tssJ are separated by 24 nucleotides tssJ and tssK overlap by 4 nucleotides
LU632_RS03770: LU632_RS03770 - hypothetical protein, at 750,206 to 750,706
_RS03770
LU632_RS03775: tssJ - type VI secretion system lipoprotein TssJ, at 750,731 to 751,267
tssJ
LU632_RS03780: tssK - type VI secretion system baseplate subunit TssK, at 751,264 to 752,607
tssK
Position (kb) 750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 749.979 kb on + strand at 749.988 kb on + strand at 750.003 kb on + strand at 750.037 kb on + strand at 750.037 kb on + strand at 750.038 kb on - strand at 750.038 kb on - strand at 750.151 kb on + strand at 750.151 kb on + strand at 750.151 kb on + strand at 750.151 kb on + strand at 750.151 kb on + strand at 750.189 kb on - strand at 750.395 kb on + strand, within LU632_RS03770 at 750.396 kb on - strand, within LU632_RS03770 at 750.467 kb on + strand, within LU632_RS03770 at 750.468 kb on - strand, within LU632_RS03770 at 750.535 kb on - strand, within LU632_RS03770 at 750.539 kb on + strand, within LU632_RS03770 at 750.588 kb on + strand, within LU632_RS03770 at 750.589 kb on - strand, within LU632_RS03770 at 750.608 kb on - strand, within LU632_RS03770 at 750.608 kb on - strand, within LU632_RS03770 at 750.700 kb on + strand at 750.700 kb on + strand at 750.701 kb on - strand at 750.731 kb on - strand at 750.783 kb on + strand at 750.784 kb on - strand at 750.784 kb on - strand at 750.784 kb on - strand at 750.836 kb on + strand, within tssJ at 750.836 kb on + strand, within tssJ at 750.837 kb on - strand, within tssJ at 750.972 kb on + strand, within tssJ at 751.027 kb on + strand, within tssJ at 751.028 kb on - strand, within tssJ at 751.198 kb on + strand, within tssJ at 751.264 kb on - strand at 751.557 kb on - strand, within tssK at 751.642 kb on + strand, within tssK at 751.643 kb on - strand, within tssK at 751.794 kb on + strand, within tssK at 751.813 kb on - strand, within tssK at 751.819 kb on + strand, within tssK at 751.819 kb on + strand, within tssK at 751.820 kb on - strand, within tssK at 751.820 kb on - strand, within tssK at 751.820 kb on - strand, within tssK at 751.821 kb on + strand, within tssK at 751.867 kb on + strand, within tssK at 751.968 kb on + strand, within tssK at 751.969 kb on - strand, within tssK at 752.128 kb on + strand, within tssK at 752.128 kb on + strand, within tssK
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 749,979 + +1.2 749,988 + -1.3 750,003 + +1.5 750,037 + +0.4 750,037 + -2.9 750,038 - -0.3 750,038 - +2.6 750,151 + +0.4 750,151 + -0.4 750,151 + -1.9 750,151 + -0.2 750,151 + -0.9 750,189 - +0.1 750,395 + LU632_RS03770 0.38 +1.0 750,396 - LU632_RS03770 0.38 -1.3 750,467 + LU632_RS03770 0.52 -0.0 750,468 - LU632_RS03770 0.52 +2.5 750,535 - LU632_RS03770 0.66 +1.8 750,539 + LU632_RS03770 0.66 -0.5 750,588 + LU632_RS03770 0.76 +1.7 750,589 - LU632_RS03770 0.76 +1.1 750,608 - LU632_RS03770 0.80 +1.9 750,608 - LU632_RS03770 0.80 +0.9 750,700 + +1.2 750,700 + +2.1 750,701 - +0.7 750,731 - +0.2 750,783 + +0.9 750,784 - +0.7 750,784 - +1.4 750,784 - +0.1 750,836 + tssJ LU632_RS03775 0.20 +2.1 750,836 + tssJ LU632_RS03775 0.20 -0.8 750,837 - tssJ LU632_RS03775 0.20 +4.5 750,972 + tssJ LU632_RS03775 0.45 -2.3 751,027 + tssJ LU632_RS03775 0.55 -1.2 751,028 - tssJ LU632_RS03775 0.55 +3.9 751,198 + tssJ LU632_RS03775 0.87 +2.3 751,264 - +0.5 751,557 - tssK LU632_RS03780 0.22 +0.9 751,642 + tssK LU632_RS03780 0.28 +0.2 751,643 - tssK LU632_RS03780 0.28 +1.8 751,794 + tssK LU632_RS03780 0.39 -1.3 751,813 - tssK LU632_RS03780 0.41 +2.9 751,819 + tssK LU632_RS03780 0.41 +0.3 751,819 + tssK LU632_RS03780 0.41 -0.6 751,820 - tssK LU632_RS03780 0.41 +0.2 751,820 - tssK LU632_RS03780 0.41 +1.1 751,820 - tssK LU632_RS03780 0.41 +1.7 751,821 + tssK LU632_RS03780 0.41 +1.0 751,867 + tssK LU632_RS03780 0.45 +2.1 751,968 + tssK LU632_RS03780 0.52 +1.1 751,969 - tssK LU632_RS03780 0.52 +2.6 752,128 + tssK LU632_RS03780 0.64 -2.0 752,128 + tssK LU632_RS03780 0.64 -0.0
Or see this region's nucleotide sequence