Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03480

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03470 and LU632_RS03475 are separated by 58 nucleotidesLU632_RS03475 and LU632_RS03480 are separated by 260 nucleotidesLU632_RS03480 and LU632_RS03485 overlap by 1 nucleotidesLU632_RS03485 and LU632_RS03490 are separated by 130 nucleotidesLU632_RS03490 and LU632_RS03495 are separated by 30 nucleotides LU632_RS03470: LU632_RS03470 - hypothetical protein, at 708,457 to 708,939 _RS03470 LU632_RS03475: LU632_RS03475 - hypothetical protein, at 708,998 to 709,186 _RS03475 LU632_RS03480: LU632_RS03480 - tyrosine-type recombinase/integrase, at 709,447 to 710,481 _RS03480 LU632_RS03485: LU632_RS03485 - helix-turn-helix domain-containing protein, at 710,481 to 711,053 _RS03485 LU632_RS03490: LU632_RS03490 - hypothetical protein, at 711,184 to 711,447 _RS03490 LU632_RS03495: LU632_RS03495 - phage regulatory CII family protein, at 711,478 to 711,987 _RS03495 Position (kb) 709 710 711Strain fitness (log2 ratio) -2 -1 0 1 2 3at 708.451 kb on + strandat 708.451 kb on + strandat 708.451 kb on + strandat 708.452 kb on - strandat 708.452 kb on - strandat 708.452 kb on - strandat 708.452 kb on - strandat 708.491 kb on + strandat 708.533 kb on + strand, within LU632_RS03470at 708.534 kb on - strand, within LU632_RS03470at 708.551 kb on - strand, within LU632_RS03470at 708.599 kb on + strand, within LU632_RS03470at 708.703 kb on + strand, within LU632_RS03470at 708.704 kb on - strand, within LU632_RS03470at 708.770 kb on + strand, within LU632_RS03470at 708.771 kb on - strand, within LU632_RS03470at 708.772 kb on + strand, within LU632_RS03470at 708.773 kb on - strand, within LU632_RS03470at 708.835 kb on + strand, within LU632_RS03470at 708.835 kb on + strand, within LU632_RS03470at 708.835 kb on + strand, within LU632_RS03470at 708.836 kb on - strand, within LU632_RS03470at 708.836 kb on - strand, within LU632_RS03470at 708.953 kb on - strandat 708.962 kb on + strandat 708.972 kb on + strandat 708.972 kb on + strandat 708.972 kb on + strandat 708.995 kb on - strandat 708.997 kb on + strandat 708.997 kb on + strandat 708.997 kb on + strandat 708.998 kb on - strandat 709.003 kb on - strandat 709.027 kb on + strand, within LU632_RS03475at 709.028 kb on - strand, within LU632_RS03475at 709.030 kb on + strand, within LU632_RS03475at 709.080 kb on + strand, within LU632_RS03475at 709.085 kb on - strand, within LU632_RS03475at 709.094 kb on - strand, within LU632_RS03475at 709.105 kb on - strand, within LU632_RS03475at 709.155 kb on - strand, within LU632_RS03475at 709.251 kb on - strandat 709.251 kb on - strandat 709.444 kb on + strandat 709.455 kb on + strandat 709.523 kb on - strandat 709.565 kb on - strand, within LU632_RS03480at 709.565 kb on - strand, within LU632_RS03480at 709.602 kb on + strand, within LU632_RS03480at 709.620 kb on + strand, within LU632_RS03480at 709.657 kb on - strand, within LU632_RS03480at 709.716 kb on - strand, within LU632_RS03480at 709.763 kb on + strand, within LU632_RS03480at 709.764 kb on - strand, within LU632_RS03480at 709.780 kb on - strand, within LU632_RS03480at 709.817 kb on + strand, within LU632_RS03480at 709.817 kb on + strand, within LU632_RS03480at 709.817 kb on + strand, within LU632_RS03480at 709.817 kb on + strand, within LU632_RS03480at 709.936 kb on - strand, within LU632_RS03480at 710.056 kb on + strand, within LU632_RS03480at 710.081 kb on + strand, within LU632_RS03480at 710.097 kb on + strand, within LU632_RS03480at 710.098 kb on - strand, within LU632_RS03480at 710.127 kb on + strand, within LU632_RS03480at 710.238 kb on + strand, within LU632_RS03480at 710.239 kb on - strand, within LU632_RS03480at 710.242 kb on + strand, within LU632_RS03480at 710.271 kb on + strand, within LU632_RS03480at 710.287 kb on - strand, within LU632_RS03480at 710.288 kb on + strand, within LU632_RS03480at 710.288 kb on + strand, within LU632_RS03480at 710.288 kb on + strand, within LU632_RS03480at 710.288 kb on + strand, within LU632_RS03480at 710.388 kb on + strandat 710.389 kb on - strandat 711.308 kb on + strand, within LU632_RS03490at 711.367 kb on - strand, within LU632_RS03490at 711.367 kb on - strand, within LU632_RS03490at 711.370 kb on + strand, within LU632_RS03490

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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708,451 + +0.5
708,451 + -0.7
708,451 + -2.5
708,452 - -1.4
708,452 - -0.3
708,452 - -1.3
708,452 - +0.5
708,491 + +0.2
708,533 + LU632_RS03470 0.16 -2.1
708,534 - LU632_RS03470 0.16 +0.5
708,551 - LU632_RS03470 0.19 -0.2
708,599 + LU632_RS03470 0.29 -1.5
708,703 + LU632_RS03470 0.51 +1.5
708,704 - LU632_RS03470 0.51 +0.8
708,770 + LU632_RS03470 0.65 +0.1
708,771 - LU632_RS03470 0.65 +0.0
708,772 + LU632_RS03470 0.65 -0.9
708,773 - LU632_RS03470 0.65 +0.7
708,835 + LU632_RS03470 0.78 +2.0
708,835 + LU632_RS03470 0.78 +0.5
708,835 + LU632_RS03470 0.78 -1.5
708,836 - LU632_RS03470 0.78 -2.5
708,836 - LU632_RS03470 0.78 +0.5
708,953 - -2.5
708,962 + +1.2
708,972 + -2.0
708,972 + -1.6
708,972 + -1.1
708,995 - +0.8
708,997 + +2.1
708,997 + -0.3
708,997 + +0.1
708,998 - -0.3
709,003 - -1.6
709,027 + LU632_RS03475 0.15 -1.4
709,028 - LU632_RS03475 0.16 -0.6
709,030 + LU632_RS03475 0.17 -0.2
709,080 + LU632_RS03475 0.43 -0.3
709,085 - LU632_RS03475 0.46 -1.5
709,094 - LU632_RS03475 0.51 +1.2
709,105 - LU632_RS03475 0.57 -2.3
709,155 - LU632_RS03475 0.83 -0.4
709,251 - +0.0
709,251 - +0.5
709,444 + -0.1
709,455 + -1.7
709,523 - +2.6
709,565 - LU632_RS03480 0.11 -0.2
709,565 - LU632_RS03480 0.11 +1.0
709,602 + LU632_RS03480 0.15 -1.7
709,620 + LU632_RS03480 0.17 -1.1
709,657 - LU632_RS03480 0.20 -1.7
709,716 - LU632_RS03480 0.26 -0.7
709,763 + LU632_RS03480 0.31 +0.7
709,764 - LU632_RS03480 0.31 -0.5
709,780 - LU632_RS03480 0.32 +0.7
709,817 + LU632_RS03480 0.36 +3.6
709,817 + LU632_RS03480 0.36 -1.8
709,817 + LU632_RS03480 0.36 -2.3
709,817 + LU632_RS03480 0.36 -0.3
709,936 - LU632_RS03480 0.47 -1.5
710,056 + LU632_RS03480 0.59 +0.7
710,081 + LU632_RS03480 0.61 +0.5
710,097 + LU632_RS03480 0.63 -0.3
710,098 - LU632_RS03480 0.63 +1.2
710,127 + LU632_RS03480 0.66 -1.7
710,238 + LU632_RS03480 0.76 -0.2
710,239 - LU632_RS03480 0.77 -1.9
710,242 + LU632_RS03480 0.77 -0.5
710,271 + LU632_RS03480 0.80 -0.9
710,287 - LU632_RS03480 0.81 -0.6
710,288 + LU632_RS03480 0.81 +0.5
710,288 + LU632_RS03480 0.81 -1.2
710,288 + LU632_RS03480 0.81 +0.5
710,288 + LU632_RS03480 0.81 +0.3
710,388 + +0.3
710,389 - +1.0
711,308 + LU632_RS03490 0.47 +0.1
711,367 - LU632_RS03490 0.69 +0.4
711,367 - LU632_RS03490 0.69 +0.5
711,370 + LU632_RS03490 0.70 -1.5

Or see this region's nucleotide sequence