Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03405

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03400 and LU632_RS03405 are separated by 9 nucleotidesLU632_RS03405 and LU632_RS03410 are separated by 129 nucleotidesLU632_RS03410 and LU632_RS03415 are separated by 8 nucleotidesLU632_RS03415 and LU632_RS03420 are separated by 178 nucleotides LU632_RS03400: LU632_RS03400 - integrase family protein, at 696,173 to 697,573 _RS03400 LU632_RS03405: LU632_RS03405 - hypothetical protein, at 697,583 to 698,206 _RS03405 LU632_RS03410: LU632_RS03410 - helix-turn-helix domain-containing protein, at 698,336 to 698,536 _RS03410 LU632_RS03415: LU632_RS03415 - hypothetical protein, at 698,545 to 698,988 _RS03415 LU632_RS03420: LU632_RS03420 - hypothetical protein, at 699,167 to 699,355 _RS03420 Position (kb) 697 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 696.603 kb on + strand, within LU632_RS03400at 696.604 kb on - strand, within LU632_RS03400at 696.604 kb on - strand, within LU632_RS03400at 696.604 kb on - strand, within LU632_RS03400at 696.632 kb on - strand, within LU632_RS03400at 696.741 kb on + strand, within LU632_RS03400at 696.742 kb on - strand, within LU632_RS03400at 696.749 kb on + strand, within LU632_RS03400at 696.783 kb on + strand, within LU632_RS03400at 696.821 kb on - strand, within LU632_RS03400at 696.904 kb on + strand, within LU632_RS03400at 696.931 kb on + strand, within LU632_RS03400at 696.948 kb on + strand, within LU632_RS03400at 696.949 kb on - strand, within LU632_RS03400at 696.954 kb on + strand, within LU632_RS03400at 696.955 kb on - strand, within LU632_RS03400at 696.955 kb on - strand, within LU632_RS03400at 696.955 kb on - strand, within LU632_RS03400at 696.955 kb on - strand, within LU632_RS03400at 697.035 kb on + strand, within LU632_RS03400at 697.036 kb on - strand, within LU632_RS03400at 697.095 kb on + strand, within LU632_RS03400at 697.095 kb on + strand, within LU632_RS03400at 697.110 kb on - strand, within LU632_RS03400at 697.117 kb on - strand, within LU632_RS03400at 697.157 kb on + strand, within LU632_RS03400at 697.235 kb on + strand, within LU632_RS03400at 697.236 kb on - strand, within LU632_RS03400at 697.236 kb on - strand, within LU632_RS03400at 697.238 kb on - strand, within LU632_RS03400at 697.238 kb on - strand, within LU632_RS03400at 697.264 kb on + strand, within LU632_RS03400at 697.285 kb on + strand, within LU632_RS03400at 697.285 kb on + strand, within LU632_RS03400at 697.286 kb on - strand, within LU632_RS03400at 697.289 kb on + strand, within LU632_RS03400at 697.289 kb on + strand, within LU632_RS03400at 697.290 kb on - strand, within LU632_RS03400at 697.290 kb on - strand, within LU632_RS03400at 697.325 kb on + strand, within LU632_RS03400at 697.326 kb on - strand, within LU632_RS03400at 697.343 kb on - strand, within LU632_RS03400at 697.343 kb on - strand, within LU632_RS03400at 697.385 kb on + strand, within LU632_RS03400at 697.386 kb on - strand, within LU632_RS03400at 697.582 kb on + strandat 697.725 kb on + strand, within LU632_RS03405at 697.827 kb on + strand, within LU632_RS03405at 697.828 kb on - strand, within LU632_RS03405at 697.991 kb on - strand, within LU632_RS03405at 698.242 kb on + strandat 698.247 kb on - strandat 698.253 kb on + strandat 698.260 kb on + strandat 698.261 kb on - strandat 698.261 kb on - strandat 698.262 kb on + strandat 698.262 kb on + strandat 698.263 kb on - strandat 698.264 kb on + strandat 698.265 kb on - strandat 698.271 kb on + strandat 698.320 kb on - strandat 698.336 kb on - strandat 698.344 kb on - strandat 698.347 kb on - strandat 698.354 kb on - strandat 698.448 kb on - strand, within LU632_RS03410at 698.484 kb on - strand, within LU632_RS03410at 698.484 kb on - strand, within LU632_RS03410at 698.508 kb on - strand, within LU632_RS03410at 698.508 kb on - strand, within LU632_RS03410at 698.508 kb on - strand, within LU632_RS03410at 698.680 kb on + strand, within LU632_RS03415at 698.682 kb on + strand, within LU632_RS03415at 698.683 kb on - strand, within LU632_RS03415at 698.683 kb on - strand, within LU632_RS03415at 698.758 kb on + strand, within LU632_RS03415at 699.045 kb on + strandat 699.045 kb on + strandat 699.045 kb on + strandat 699.090 kb on + strandat 699.140 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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696,603 + LU632_RS03400 0.31 -0.1
696,604 - LU632_RS03400 0.31 +0.5
696,604 - LU632_RS03400 0.31 +1.3
696,604 - LU632_RS03400 0.31 +0.0
696,632 - LU632_RS03400 0.33 -1.2
696,741 + LU632_RS03400 0.41 +0.0
696,742 - LU632_RS03400 0.41 +4.0
696,749 + LU632_RS03400 0.41 -1.6
696,783 + LU632_RS03400 0.44 +0.4
696,821 - LU632_RS03400 0.46 +0.7
696,904 + LU632_RS03400 0.52 +0.6
696,931 + LU632_RS03400 0.54 +0.6
696,948 + LU632_RS03400 0.55 +0.5
696,949 - LU632_RS03400 0.55 +0.5
696,954 + LU632_RS03400 0.56 -1.3
696,955 - LU632_RS03400 0.56 +1.3
696,955 - LU632_RS03400 0.56 -2.0
696,955 - LU632_RS03400 0.56 -0.9
696,955 - LU632_RS03400 0.56 -0.2
697,035 + LU632_RS03400 0.62 -0.4
697,036 - LU632_RS03400 0.62 +3.0
697,095 + LU632_RS03400 0.66 -1.9
697,095 + LU632_RS03400 0.66 +1.3
697,110 - LU632_RS03400 0.67 +0.4
697,117 - LU632_RS03400 0.67 -2.0
697,157 + LU632_RS03400 0.70 +0.9
697,235 + LU632_RS03400 0.76 +0.2
697,236 - LU632_RS03400 0.76 +1.0
697,236 - LU632_RS03400 0.76 +3.3
697,238 - LU632_RS03400 0.76 -0.0
697,238 - LU632_RS03400 0.76 -0.5
697,264 + LU632_RS03400 0.78 -1.8
697,285 + LU632_RS03400 0.79 -1.3
697,285 + LU632_RS03400 0.79 -0.9
697,286 - LU632_RS03400 0.79 -1.6
697,289 + LU632_RS03400 0.80 -1.8
697,289 + LU632_RS03400 0.80 -1.2
697,290 - LU632_RS03400 0.80 +0.1
697,290 - LU632_RS03400 0.80 +0.5
697,325 + LU632_RS03400 0.82 -1.0
697,326 - LU632_RS03400 0.82 -0.1
697,343 - LU632_RS03400 0.84 -0.8
697,343 - LU632_RS03400 0.84 -2.5
697,385 + LU632_RS03400 0.87 -1.6
697,386 - LU632_RS03400 0.87 -1.7
697,582 + -0.1
697,725 + LU632_RS03405 0.23 -0.9
697,827 + LU632_RS03405 0.39 -1.2
697,828 - LU632_RS03405 0.39 +0.9
697,991 - LU632_RS03405 0.65 -0.7
698,242 + +0.2
698,247 - -0.5
698,253 + -2.5
698,260 + +1.3
698,261 - +3.3
698,261 - +1.3
698,262 + +0.5
698,262 + -0.1
698,263 - -0.9
698,264 + -0.2
698,265 - +1.1
698,271 + +0.6
698,320 - +0.3
698,336 - +0.4
698,344 - +1.4
698,347 - -2.1
698,354 - -1.5
698,448 - LU632_RS03410 0.56 +1.1
698,484 - LU632_RS03410 0.74 -0.7
698,484 - LU632_RS03410 0.74 -2.7
698,508 - LU632_RS03410 0.86 -0.7
698,508 - LU632_RS03410 0.86 -0.6
698,508 - LU632_RS03410 0.86 -2.1
698,680 + LU632_RS03415 0.30 -0.9
698,682 + LU632_RS03415 0.31 -0.2
698,683 - LU632_RS03415 0.31 -1.6
698,683 - LU632_RS03415 0.31 -3.1
698,758 + LU632_RS03415 0.48 -0.8
699,045 + -2.8
699,045 + +1.0
699,045 + -0.1
699,090 + -0.5
699,140 + -0.5

Or see this region's nucleotide sequence