Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03350 and LU632_RS03355 are separated by 761 nucleotides LU632_RS03355 and LU632_RS03360 are separated by 248 nucleotides
LU632_RS03350: LU632_RS03350 - IS5 family transposase, at 687,554 to 688,397
_RS03350
LU632_RS03355: LU632_RS03355 - hypothetical protein, at 689,159 to 689,371
_RS03355
LU632_RS03360: LU632_RS03360 - methyl-accepting chemotaxis protein, at 689,620 to 691,278
_RS03360
Position (kb) 689
690 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 688.430 kb on + strand at 688.473 kb on - strand at 688.501 kb on - strand at 688.501 kb on - strand at 688.511 kb on + strand at 688.586 kb on + strand at 688.604 kb on - strand at 688.617 kb on + strand at 688.618 kb on - strand at 688.644 kb on + strand at 688.648 kb on + strand at 688.648 kb on + strand at 688.730 kb on - strand at 688.747 kb on + strand at 688.747 kb on + strand at 688.748 kb on - strand at 688.748 kb on - strand at 688.811 kb on - strand at 688.811 kb on - strand at 688.815 kb on - strand at 688.920 kb on - strand at 688.920 kb on - strand at 689.106 kb on + strand at 689.107 kb on - strand at 689.172 kb on + strand at 689.172 kb on + strand at 689.303 kb on - strand, within LU632_RS03355 at 689.306 kb on + strand, within LU632_RS03355 at 689.307 kb on - strand, within LU632_RS03355 at 689.307 kb on - strand, within LU632_RS03355 at 689.467 kb on + strand at 689.467 kb on + strand at 689.479 kb on - strand at 689.560 kb on - strand at 689.560 kb on - strand at 689.562 kb on - strand at 689.572 kb on + strand at 689.637 kb on + strand at 689.862 kb on + strand, within LU632_RS03360 at 690.015 kb on - strand, within LU632_RS03360 at 690.184 kb on - strand, within LU632_RS03360 at 690.184 kb on - strand, within LU632_RS03360
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 688,430 + -2.0 688,473 - -2.2 688,501 - -1.2 688,501 - -1.6 688,511 + -0.4 688,586 + +1.2 688,604 - +2.9 688,617 + +1.4 688,618 - +0.6 688,644 + -1.0 688,648 + -1.4 688,648 + -1.6 688,730 - +2.2 688,747 + +0.6 688,747 + +1.3 688,748 - -2.7 688,748 - +1.1 688,811 - -3.2 688,811 - +0.5 688,815 - -0.1 688,920 - -0.5 688,920 - +0.7 689,106 + +0.4 689,107 - -1.7 689,172 + +2.3 689,172 + -2.2 689,303 - LU632_RS03355 0.68 -1.3 689,306 + LU632_RS03355 0.69 -0.0 689,307 - LU632_RS03355 0.69 -1.8 689,307 - LU632_RS03355 0.69 -0.0 689,467 + +0.3 689,467 + -1.2 689,479 - -2.8 689,560 - +1.6 689,560 - -1.0 689,562 - -2.5 689,572 + +0.0 689,637 + -1.3 689,862 + LU632_RS03360 0.15 -0.3 690,015 - LU632_RS03360 0.24 -0.0 690,184 - LU632_RS03360 0.34 +0.5 690,184 - LU632_RS03360 0.34 -1.5
Or see this region's nucleotide sequence