Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03315

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03310 and LU632_RS03315 are separated by 172 nucleotidesLU632_RS03315 and LU632_RS03320 are separated by 181 nucleotidesLU632_RS03320 and LU632_RS03325 overlap by 4 nucleotides LU632_RS03310: LU632_RS03310 - sucrose-6-phosphate hydrolase, at 678,961 to 680,370 _RS03310 LU632_RS03315: LU632_RS03315 - MbeD family mobilization/exclusion protein, at 680,543 to 680,757 _RS03315 LU632_RS03320: LU632_RS03320 - hypothetical protein, at 680,939 to 681,630 _RS03320 LU632_RS03325: LU632_RS03325 - hypothetical protein, at 681,627 to 682,049 _RS03325 Position (kb) 680 681Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 679.603 kb on + strand, within LU632_RS03310at 679.648 kb on + strand, within LU632_RS03310at 679.746 kb on + strand, within LU632_RS03310at 679.746 kb on + strand, within LU632_RS03310at 679.746 kb on + strand, within LU632_RS03310at 679.747 kb on - strand, within LU632_RS03310at 679.747 kb on - strand, within LU632_RS03310at 679.749 kb on + strand, within LU632_RS03310at 679.749 kb on + strand, within LU632_RS03310at 679.749 kb on + strand, within LU632_RS03310at 679.750 kb on - strand, within LU632_RS03310at 679.750 kb on - strand, within LU632_RS03310at 679.750 kb on - strand, within LU632_RS03310at 679.750 kb on - strand, within LU632_RS03310at 679.753 kb on + strand, within LU632_RS03310at 679.755 kb on + strand, within LU632_RS03310at 679.799 kb on - strand, within LU632_RS03310at 679.957 kb on + strand, within LU632_RS03310at 679.958 kb on - strand, within LU632_RS03310at 680.010 kb on + strand, within LU632_RS03310at 680.061 kb on - strand, within LU632_RS03310at 680.086 kb on - strand, within LU632_RS03310at 680.091 kb on + strand, within LU632_RS03310at 680.092 kb on - strand, within LU632_RS03310at 680.348 kb on + strandat 680.349 kb on - strandat 680.368 kb on + strandat 680.411 kb on + strandat 680.411 kb on + strandat 680.537 kb on + strandat 680.538 kb on - strandat 680.565 kb on + strand, within LU632_RS03315at 680.565 kb on + strand, within LU632_RS03315at 680.566 kb on - strand, within LU632_RS03315at 680.566 kb on - strand, within LU632_RS03315at 680.592 kb on - strand, within LU632_RS03315at 680.597 kb on + strand, within LU632_RS03315at 680.598 kb on - strand, within LU632_RS03315at 680.598 kb on - strand, within LU632_RS03315at 680.601 kb on + strand, within LU632_RS03315at 680.602 kb on - strand, within LU632_RS03315at 680.602 kb on - strand, within LU632_RS03315at 680.668 kb on + strand, within LU632_RS03315at 680.845 kb on - strandat 680.845 kb on - strandat 680.845 kb on - strandat 680.845 kb on - strandat 680.944 kb on + strandat 681.012 kb on + strand, within LU632_RS03320at 681.108 kb on - strand, within LU632_RS03320at 681.108 kb on - strand, within LU632_RS03320at 681.119 kb on + strand, within LU632_RS03320at 681.283 kb on + strand, within LU632_RS03320at 681.283 kb on + strand, within LU632_RS03320at 681.333 kb on - strand, within LU632_RS03320at 681.333 kb on - strand, within LU632_RS03320at 681.380 kb on - strand, within LU632_RS03320at 681.428 kb on - strand, within LU632_RS03320at 681.520 kb on - strand, within LU632_RS03320at 681.594 kb on - strandat 681.594 kb on - strandat 681.615 kb on + strandat 681.615 kb on + strandat 681.616 kb on - strandat 681.658 kb on + strandat 681.659 kb on - strandat 681.659 kb on - strandat 681.659 kb on - strandat 681.675 kb on - strand, within LU632_RS03325at 681.699 kb on + strand, within LU632_RS03325at 681.700 kb on - strand, within LU632_RS03325at 681.701 kb on + strand, within LU632_RS03325at 681.701 kb on + strand, within LU632_RS03325at 681.701 kb on + strand, within LU632_RS03325at 681.702 kb on - strand, within LU632_RS03325at 681.702 kb on - strand, within LU632_RS03325at 681.702 kb on - strand, within LU632_RS03325at 681.732 kb on + strand, within LU632_RS03325at 681.732 kb on + strand, within LU632_RS03325at 681.734 kb on + strand, within LU632_RS03325at 681.734 kb on + strand, within LU632_RS03325at 681.735 kb on - strand, within LU632_RS03325at 681.735 kb on - strand, within LU632_RS03325at 681.756 kb on + strand, within LU632_RS03325at 681.757 kb on - strand, within LU632_RS03325

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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679,603 + LU632_RS03310 0.46 -3.9
679,648 + LU632_RS03310 0.49 -5.3
679,746 + LU632_RS03310 0.56 -0.5
679,746 + LU632_RS03310 0.56 -1.6
679,746 + LU632_RS03310 0.56 -2.2
679,747 - LU632_RS03310 0.56 +0.7
679,747 - LU632_RS03310 0.56 -1.6
679,749 + LU632_RS03310 0.56 -1.3
679,749 + LU632_RS03310 0.56 -5.0
679,749 + LU632_RS03310 0.56 -2.9
679,750 - LU632_RS03310 0.56 -3.1
679,750 - LU632_RS03310 0.56 -2.7
679,750 - LU632_RS03310 0.56 +1.3
679,750 - LU632_RS03310 0.56 -3.5
679,753 + LU632_RS03310 0.56 -1.2
679,755 + LU632_RS03310 0.56 -1.5
679,799 - LU632_RS03310 0.59 -0.3
679,957 + LU632_RS03310 0.71 -2.7
679,958 - LU632_RS03310 0.71 -1.1
680,010 + LU632_RS03310 0.74 -2.7
680,061 - LU632_RS03310 0.78 -5.1
680,086 - LU632_RS03310 0.80 -2.3
680,091 + LU632_RS03310 0.80 +0.0
680,092 - LU632_RS03310 0.80 +0.0
680,348 + +1.6
680,349 - +0.3
680,368 + -0.4
680,411 + +0.3
680,411 + +1.8
680,537 + -2.1
680,538 - -1.8
680,565 + LU632_RS03315 0.10 +1.3
680,565 + LU632_RS03315 0.10 +1.0
680,566 - LU632_RS03315 0.11 -0.7
680,566 - LU632_RS03315 0.11 +1.2
680,592 - LU632_RS03315 0.23 +0.3
680,597 + LU632_RS03315 0.25 -0.3
680,598 - LU632_RS03315 0.26 +1.9
680,598 - LU632_RS03315 0.26 -0.4
680,601 + LU632_RS03315 0.27 -0.5
680,602 - LU632_RS03315 0.27 +0.1
680,602 - LU632_RS03315 0.27 +3.5
680,668 + LU632_RS03315 0.58 -0.5
680,845 - +2.4
680,845 - +1.3
680,845 - -0.8
680,845 - -0.1
680,944 + -3.2
681,012 + LU632_RS03320 0.11 -0.4
681,108 - LU632_RS03320 0.24 +1.0
681,108 - LU632_RS03320 0.24 -0.0
681,119 + LU632_RS03320 0.26 +0.9
681,283 + LU632_RS03320 0.50 -0.7
681,283 + LU632_RS03320 0.50 -2.5
681,333 - LU632_RS03320 0.57 +0.2
681,333 - LU632_RS03320 0.57 -1.3
681,380 - LU632_RS03320 0.64 +0.5
681,428 - LU632_RS03320 0.71 +3.0
681,520 - LU632_RS03320 0.84 -0.5
681,594 - +1.3
681,594 - +0.4
681,615 + +2.2
681,615 + -2.2
681,616 - +1.6
681,658 + +0.4
681,659 - +2.0
681,659 - +3.2
681,659 - -0.3
681,675 - LU632_RS03325 0.11 +2.1
681,699 + LU632_RS03325 0.17 -0.9
681,700 - LU632_RS03325 0.17 +3.1
681,701 + LU632_RS03325 0.17 -2.3
681,701 + LU632_RS03325 0.17 +0.2
681,701 + LU632_RS03325 0.17 -0.5
681,702 - LU632_RS03325 0.18 +0.1
681,702 - LU632_RS03325 0.18 -0.6
681,702 - LU632_RS03325 0.18 +0.7
681,732 + LU632_RS03325 0.25 -0.3
681,732 + LU632_RS03325 0.25 -0.3
681,734 + LU632_RS03325 0.25 +1.7
681,734 + LU632_RS03325 0.25 -0.9
681,735 - LU632_RS03325 0.26 +3.8
681,735 - LU632_RS03325 0.26 +2.4
681,756 + LU632_RS03325 0.30 +2.7
681,757 - LU632_RS03325 0.31 +3.2

Or see this region's nucleotide sequence