Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03120

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03110 and LU632_RS03115 are separated by 87 nucleotidesLU632_RS03115 and LU632_RS03120 are separated by 341 nucleotidesLU632_RS03120 and LU632_RS03125 are separated by 321 nucleotidesLU632_RS03125 and sctU are separated by 103 nucleotides LU632_RS03110: LU632_RS03110 - type III effector HrpK, at 637,433 to 639,808 _RS03110 LU632_RS03115: LU632_RS03115 - hypothetical protein, at 639,896 to 640,225 _RS03115 LU632_RS03120: LU632_RS03120 - acyl-CoA thioesterase, at 640,567 to 640,950 _RS03120 LU632_RS03125: LU632_RS03125 - GNAT family N-acetyltransferase, at 641,272 to 641,721 _RS03125 LU632_RS03130: sctU - type III secretion system export apparatus subunit SctU, at 641,825 to 642,907 sctU Position (kb) 640 641Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 639.674 kb on - strandat 639.730 kb on + strandat 639.844 kb on - strandat 639.865 kb on - strandat 639.865 kb on - strandat 639.901 kb on + strandat 639.901 kb on + strandat 639.928 kb on + strandat 639.962 kb on - strand, within LU632_RS03115at 640.030 kb on + strand, within LU632_RS03115at 640.186 kb on + strand, within LU632_RS03115at 640.226 kb on - strandat 640.316 kb on - strandat 640.332 kb on - strandat 640.460 kb on + strandat 640.520 kb on + strandat 640.520 kb on + strandat 640.525 kb on - strandat 640.669 kb on + strand, within LU632_RS03120at 640.774 kb on - strand, within LU632_RS03120at 640.788 kb on + strand, within LU632_RS03120at 640.788 kb on + strand, within LU632_RS03120at 640.845 kb on + strand, within LU632_RS03120at 640.845 kb on + strand, within LU632_RS03120at 640.846 kb on - strand, within LU632_RS03120at 640.847 kb on + strand, within LU632_RS03120at 640.847 kb on + strand, within LU632_RS03120at 640.847 kb on + strand, within LU632_RS03120at 640.847 kb on + strand, within LU632_RS03120at 640.848 kb on - strand, within LU632_RS03120at 640.848 kb on - strand, within LU632_RS03120at 640.848 kb on - strand, within LU632_RS03120at 640.884 kb on - strand, within LU632_RS03120at 640.935 kb on - strandat 641.039 kb on + strandat 641.056 kb on + strandat 641.156 kb on + strandat 641.156 kb on + strandat 641.156 kb on + strandat 641.156 kb on + strandat 641.156 kb on + strandat 641.156 kb on + strandat 641.157 kb on - strandat 641.157 kb on - strandat 641.157 kb on - strandat 641.157 kb on - strandat 641.210 kb on - strandat 641.250 kb on + strandat 641.273 kb on + strandat 641.273 kb on + strandat 641.274 kb on - strandat 641.274 kb on - strandat 641.293 kb on + strandat 641.293 kb on + strandat 641.327 kb on + strand, within LU632_RS03125at 641.328 kb on - strand, within LU632_RS03125at 641.535 kb on + strand, within LU632_RS03125at 641.535 kb on + strand, within LU632_RS03125at 641.580 kb on + strand, within LU632_RS03125at 641.580 kb on + strand, within LU632_RS03125at 641.581 kb on - strand, within LU632_RS03125at 641.593 kb on - strand, within LU632_RS03125at 641.639 kb on + strand, within LU632_RS03125at 641.639 kb on + strand, within LU632_RS03125at 641.639 kb on + strand, within LU632_RS03125at 641.640 kb on - strand, within LU632_RS03125at 641.640 kb on - strand, within LU632_RS03125at 641.640 kb on - strand, within LU632_RS03125at 641.640 kb on - strand, within LU632_RS03125at 641.640 kb on - strand, within LU632_RS03125at 641.640 kb on - strand, within LU632_RS03125at 641.640 kb on - strand, within LU632_RS03125at 641.673 kb on + strand, within LU632_RS03125at 641.708 kb on - strandat 641.709 kb on + strandat 641.710 kb on - strandat 641.767 kb on + strandat 641.767 kb on + strandat 641.795 kb on + strandat 641.914 kb on + strandat 641.915 kb on - strandat 641.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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639,674 - -1.1
639,730 + -1.6
639,844 - -2.0
639,865 - -0.3
639,865 - +1.4
639,901 + -0.1
639,901 + -1.1
639,928 + -0.7
639,962 - LU632_RS03115 0.20 -0.4
640,030 + LU632_RS03115 0.41 +1.7
640,186 + LU632_RS03115 0.88 +1.1
640,226 - -2.1
640,316 - +0.5
640,332 - +0.6
640,460 + -0.9
640,520 + -0.9
640,520 + -0.5
640,525 - -0.1
640,669 + LU632_RS03120 0.27 -3.5
640,774 - LU632_RS03120 0.54 -1.8
640,788 + LU632_RS03120 0.58 -0.5
640,788 + LU632_RS03120 0.58 +0.4
640,845 + LU632_RS03120 0.72 +1.5
640,845 + LU632_RS03120 0.72 +0.5
640,846 - LU632_RS03120 0.73 -1.3
640,847 + LU632_RS03120 0.73 +1.2
640,847 + LU632_RS03120 0.73 +0.4
640,847 + LU632_RS03120 0.73 -1.1
640,847 + LU632_RS03120 0.73 +1.4
640,848 - LU632_RS03120 0.73 +1.3
640,848 - LU632_RS03120 0.73 -0.8
640,848 - LU632_RS03120 0.73 -0.5
640,884 - LU632_RS03120 0.83 -0.5
640,935 - +0.6
641,039 + +0.0
641,056 + +1.4
641,156 + +0.9
641,156 + -0.7
641,156 + -1.0
641,156 + +0.6
641,156 + -1.1
641,156 + -3.0
641,157 - +0.2
641,157 - -0.3
641,157 - -0.5
641,157 - +0.2
641,210 - +1.0
641,250 + +0.6
641,273 + +0.6
641,273 + +0.4
641,274 - -0.1
641,274 - -0.9
641,293 + -1.4
641,293 + +2.5
641,327 + LU632_RS03125 0.12 -2.4
641,328 - LU632_RS03125 0.12 +0.6
641,535 + LU632_RS03125 0.58 -1.4
641,535 + LU632_RS03125 0.58 +0.0
641,580 + LU632_RS03125 0.68 -0.9
641,580 + LU632_RS03125 0.68 +3.4
641,581 - LU632_RS03125 0.69 +1.2
641,593 - LU632_RS03125 0.71 -0.8
641,639 + LU632_RS03125 0.82 +0.6
641,639 + LU632_RS03125 0.82 -2.2
641,639 + LU632_RS03125 0.82 -1.0
641,640 - LU632_RS03125 0.82 +0.4
641,640 - LU632_RS03125 0.82 -0.4
641,640 - LU632_RS03125 0.82 -1.6
641,640 - LU632_RS03125 0.82 -1.2
641,640 - LU632_RS03125 0.82 -2.1
641,640 - LU632_RS03125 0.82 -1.4
641,640 - LU632_RS03125 0.82 +1.0
641,673 + LU632_RS03125 0.89 +2.4
641,708 - +0.6
641,709 + -0.2
641,710 - +0.6
641,767 + -0.2
641,767 + -1.0
641,795 + +0.9
641,914 + -2.0
641,915 - +1.0
641,915 - -0.5

Or see this region's nucleotide sequence