Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02845 and LU632_RS02850 are separated by 127 nucleotides LU632_RS02850 and LU632_RS02855 are separated by 152 nucleotides LU632_RS02855 and LU632_RS02860 are separated by 319 nucleotides LU632_RS02860 and leuD are separated by 44 nucleotides
LU632_RS02845: LU632_RS02845 - MFS transporter, at 580,002 to 581,180
_RS02845
LU632_RS02850: LU632_RS02850 - hypothetical protein, at 581,308 to 581,478
_RS02850
LU632_RS02855: LU632_RS02855 - hypothetical protein, at 581,631 to 581,990
_RS02855
LU632_RS02860: LU632_RS02860 - hypothetical protein, at 582,310 to 582,480
_RS02860
LU632_RS02865: leuD - 3-isopropylmalate dehydratase small subunit, at 582,525 to 583,130
leuD
Position (kb) 581
582 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 580.661 kb on - strand, within LU632_RS02845 at 580.692 kb on - strand, within LU632_RS02845 at 580.765 kb on + strand, within LU632_RS02845 at 580.821 kb on + strand, within LU632_RS02845 at 580.848 kb on - strand, within LU632_RS02845 at 580.848 kb on - strand, within LU632_RS02845 at 580.928 kb on - strand, within LU632_RS02845 at 580.930 kb on + strand, within LU632_RS02845 at 580.930 kb on + strand, within LU632_RS02845 at 580.996 kb on + strand, within LU632_RS02845 at 581.214 kb on + strand at 581.214 kb on + strand at 581.214 kb on + strand at 581.214 kb on + strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.262 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.279 kb on - strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.427 kb on + strand, within LU632_RS02850 at 581.476 kb on + strand at 581.476 kb on + strand at 581.476 kb on + strand at 581.530 kb on - strand at 581.530 kb on - strand at 581.583 kb on + strand at 581.583 kb on + strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.906 kb on + strand, within LU632_RS02855 at 581.907 kb on - strand, within LU632_RS02855 at 581.912 kb on + strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.019 kb on - strand at 582.024 kb on + strand at 582.024 kb on + strand at 582.025 kb on - strand at 582.197 kb on + strand at 582.224 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.314 kb on + strand at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.408 kb on - strand, within LU632_RS02860 at 582.427 kb on - strand, within LU632_RS02860 at 582.479 kb on - strand at 582.520 kb on + strand at 582.596 kb on + strand, within leuD at 582.596 kb on + strand, within leuD at 582.675 kb on - strand, within leuD at 582.675 kb on - strand, within leuD at 582.759 kb on + strand, within leuD at 582.760 kb on - strand, within leuD at 582.795 kb on - strand, within leuD at 582.912 kb on - strand, within leuD at 582.912 kb on - strand, within leuD at 582.941 kb on + strand, within leuD at 582.941 kb on + strand, within leuD at 582.942 kb on - strand, within leuD
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 580,661 - LU632_RS02845 0.56 -0.8 580,692 - LU632_RS02845 0.59 -1.2 580,765 + LU632_RS02845 0.65 -1.0 580,821 + LU632_RS02845 0.69 +1.4 580,848 - LU632_RS02845 0.72 -0.3 580,848 - LU632_RS02845 0.72 +0.0 580,928 - LU632_RS02845 0.79 +0.3 580,930 + LU632_RS02845 0.79 -2.7 580,930 + LU632_RS02845 0.79 +0.2 580,996 + LU632_RS02845 0.84 +1.0 581,214 + +0.1 581,214 + -0.6 581,214 + +1.8 581,214 + -1.9 581,215 - +1.6 581,215 - +0.2 581,215 - -0.9 581,215 - +0.7 581,215 - -1.2 581,262 + -0.8 581,278 + -0.7 581,278 + -1.0 581,278 + -1.1 581,278 + +1.6 581,279 - +0.3 581,282 + -1.6 581,282 + -0.4 581,282 + +0.6 581,282 + -0.3 581,283 - +1.8 581,283 - +0.3 581,283 - -1.3 581,283 - -1.5 581,427 + LU632_RS02850 0.70 -0.3 581,476 + -2.2 581,476 + -1.5 581,476 + -0.5 581,530 - -1.1 581,530 - +1.8 581,583 + -1.4 581,583 + +1.8 581,584 - +2.4 581,584 - -0.2 581,584 - -1.0 581,584 - -0.3 581,822 + LU632_RS02855 0.53 +1.2 581,822 + LU632_RS02855 0.53 +0.8 581,822 + LU632_RS02855 0.53 +0.1 581,822 + LU632_RS02855 0.53 -0.4 581,906 + LU632_RS02855 0.76 +2.6 581,907 - LU632_RS02855 0.77 +0.3 581,912 + LU632_RS02855 0.78 +0.8 581,913 - LU632_RS02855 0.78 +2.4 581,913 - LU632_RS02855 0.78 +0.9 582,018 + -0.2 582,018 + -0.3 582,018 + -0.5 582,018 + -1.7 582,019 - -0.5 582,024 + -0.9 582,024 + -3.0 582,025 - -1.1 582,197 + +1.4 582,224 + -0.9 582,261 + +0.7 582,261 + +1.1 582,261 + -0.0 582,261 + -0.6 582,262 - +1.2 582,262 - -0.8 582,262 - +0.1 582,262 - -1.2 582,314 + -0.3 582,397 + LU632_RS02860 0.51 +2.8 582,397 + LU632_RS02860 0.51 +0.4 582,397 + LU632_RS02860 0.51 -0.8 582,397 + LU632_RS02860 0.51 -0.3 582,408 - LU632_RS02860 0.57 -0.9 582,427 - LU632_RS02860 0.68 -3.0 582,479 - +1.6 582,520 + +0.5 582,596 + leuD LU632_RS02865 0.12 -4.4 582,596 + leuD LU632_RS02865 0.12 -3.7 582,675 - leuD LU632_RS02865 0.25 -1.8 582,675 - leuD LU632_RS02865 0.25 -2.2 582,759 + leuD LU632_RS02865 0.39 -3.4 582,760 - leuD LU632_RS02865 0.39 -4.6 582,795 - leuD LU632_RS02865 0.45 -3.1 582,912 - leuD LU632_RS02865 0.64 +0.4 582,912 - leuD LU632_RS02865 0.64 -2.3 582,941 + leuD LU632_RS02865 0.69 -4.0 582,941 + leuD LU632_RS02865 0.69 -2.8 582,942 - leuD LU632_RS02865 0.69 -3.0
Or see this region's nucleotide sequence