Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02725

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsurA and pdxA overlap by 11 nucleotidespdxA and rsmA overlap by 1 nucleotidesrsmA and apaG are separated by 1 nucleotides LU632_RS02720: surA - peptidylprolyl isomerase SurA, at 547,696 to 548,991 surA LU632_RS02725: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 548,981 to 549,964 pdxA LU632_RS02730: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 549,964 to 550,794 rsmA LU632_RS02735: apaG - Co2+/Mg2+ efflux protein ApaG, at 550,796 to 551,173 apaG Position (kb) 548 549 550Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 549.649 kb on - strand, within pdxAat 549.829 kb on + strand, within pdxAat 549.934 kb on + strandat 549.962 kb on + strandat 550.033 kb on + strandat 550.034 kb on - strandat 550.036 kb on - strandat 550.144 kb on - strand, within rsmAat 550.261 kb on + strand, within rsmAat 550.309 kb on + strand, within rsmAat 550.310 kb on - strand, within rsmAat 550.311 kb on + strand, within rsmAat 550.349 kb on - strand, within rsmAat 550.351 kb on - strand, within rsmAat 550.459 kb on + strand, within rsmAat 550.538 kb on + strand, within rsmAat 550.629 kb on + strand, within rsmAat 550.835 kb on - strand, within apaGat 550.874 kb on + strand, within apaGat 550.888 kb on + strand, within apaGat 550.888 kb on + strand, within apaGat 550.929 kb on + strand, within apaG

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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549,649 - pdxA LU632_RS02725 0.68 +0.9
549,829 + pdxA LU632_RS02725 0.86 -0.3
549,934 + -2.1
549,962 + -1.4
550,033 + -0.7
550,034 - +0.6
550,036 - +1.9
550,144 - rsmA LU632_RS02730 0.22 -1.2
550,261 + rsmA LU632_RS02730 0.36 +0.5
550,309 + rsmA LU632_RS02730 0.42 -0.7
550,310 - rsmA LU632_RS02730 0.42 +1.5
550,311 + rsmA LU632_RS02730 0.42 -2.1
550,349 - rsmA LU632_RS02730 0.46 -1.3
550,351 - rsmA LU632_RS02730 0.47 -0.3
550,459 + rsmA LU632_RS02730 0.60 -0.5
550,538 + rsmA LU632_RS02730 0.69 -0.5
550,629 + rsmA LU632_RS02730 0.80 -1.0
550,835 - apaG LU632_RS02735 0.10 -1.1
550,874 + apaG LU632_RS02735 0.21 +1.4
550,888 + apaG LU632_RS02735 0.24 +1.0
550,888 + apaG LU632_RS02735 0.24 +7.1
550,929 + apaG LU632_RS02735 0.35 +1.1

Or see this region's nucleotide sequence