Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02520

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdeoC and LU632_RS02520 are separated by 15 nucleotidesLU632_RS02520 and deoB are separated by 79 nucleotides LU632_RS02515: deoC - deoxyribose-phosphate aldolase, at 499,390 to 500,169 deoC LU632_RS02520: LU632_RS02520 - thymidine phosphorylase, at 500,185 to 501,027 _RS02520 LU632_RS02525: deoB - phosphopentomutase, at 501,107 to 502,330 deoB Position (kb) 500 501 502Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 499.209 kb on + strandat 499.209 kb on + strandat 499.210 kb on - strandat 499.214 kb on + strandat 499.214 kb on + strandat 499.215 kb on - strandat 499.215 kb on - strandat 499.215 kb on - strandat 499.306 kb on + strandat 499.307 kb on - strandat 499.307 kb on - strandat 499.358 kb on + strandat 499.359 kb on - strandat 499.530 kb on + strand, within deoCat 499.530 kb on + strand, within deoCat 499.531 kb on - strand, within deoCat 499.531 kb on - strand, within deoCat 499.534 kb on + strand, within deoCat 499.884 kb on + strand, within deoCat 500.053 kb on - strand, within deoCat 500.331 kb on + strand, within LU632_RS02520at 500.331 kb on + strand, within LU632_RS02520at 500.331 kb on + strand, within LU632_RS02520at 500.332 kb on - strand, within LU632_RS02520at 500.332 kb on - strand, within LU632_RS02520at 500.403 kb on + strand, within LU632_RS02520at 500.425 kb on + strand, within LU632_RS02520at 500.426 kb on - strand, within LU632_RS02520at 500.426 kb on - strand, within LU632_RS02520at 500.429 kb on - strand, within LU632_RS02520at 500.494 kb on + strand, within LU632_RS02520at 500.494 kb on + strand, within LU632_RS02520at 500.494 kb on + strand, within LU632_RS02520at 500.494 kb on + strand, within LU632_RS02520at 500.495 kb on - strand, within LU632_RS02520at 500.495 kb on - strand, within LU632_RS02520at 500.495 kb on - strand, within LU632_RS02520at 500.511 kb on + strand, within LU632_RS02520at 500.857 kb on + strand, within LU632_RS02520at 500.857 kb on + strand, within LU632_RS02520at 500.858 kb on - strand, within LU632_RS02520at 500.959 kb on + strandat 500.959 kb on + strandat 501.051 kb on + strandat 501.117 kb on + strandat 501.117 kb on + strandat 501.205 kb on + strandat 501.206 kb on - strandat 501.247 kb on + strand, within deoBat 501.247 kb on + strand, within deoBat 501.248 kb on - strand, within deoBat 501.248 kb on - strand, within deoBat 501.368 kb on + strand, within deoBat 501.397 kb on + strand, within deoBat 501.453 kb on - strand, within deoBat 501.586 kb on + strand, within deoBat 501.586 kb on + strand, within deoBat 501.586 kb on + strand, within deoBat 501.586 kb on + strand, within deoBat 501.587 kb on - strand, within deoBat 501.587 kb on - strand, within deoBat 501.612 kb on - strand, within deoBat 501.612 kb on - strand, within deoBat 501.677 kb on + strand, within deoBat 501.722 kb on + strand, within deoBat 501.722 kb on + strand, within deoBat 501.723 kb on - strand, within deoBat 501.724 kb on + strand, within deoBat 501.724 kb on + strand, within deoBat 501.724 kb on + strand, within deoBat 501.725 kb on - strand, within deoBat 501.725 kb on - strand, within deoBat 501.826 kb on + strand, within deoBat 501.827 kb on - strand, within deoBat 501.897 kb on - strand, within deoBat 501.913 kb on + strand, within deoBat 501.914 kb on - strand, within deoBat 501.914 kb on - strand, within deoBat 501.914 kb on - strand, within deoB

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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499,209 + +0.8
499,209 + +1.2
499,210 - +2.5
499,214 + -3.0
499,214 + +2.9
499,215 - -0.5
499,215 - +0.4
499,215 - -1.6
499,306 + -2.9
499,307 - -2.2
499,307 - +0.1
499,358 + -1.6
499,359 - +0.0
499,530 + deoC LU632_RS02515 0.18 +1.8
499,530 + deoC LU632_RS02515 0.18 +1.2
499,531 - deoC LU632_RS02515 0.18 -1.0
499,531 - deoC LU632_RS02515 0.18 -0.2
499,534 + deoC LU632_RS02515 0.18 +0.1
499,884 + deoC LU632_RS02515 0.63 -1.1
500,053 - deoC LU632_RS02515 0.85 +0.1
500,331 + LU632_RS02520 0.17 -2.3
500,331 + LU632_RS02520 0.17 +1.7
500,331 + LU632_RS02520 0.17 +1.5
500,332 - LU632_RS02520 0.17 -1.3
500,332 - LU632_RS02520 0.17 -2.1
500,403 + LU632_RS02520 0.26 +5.5
500,425 + LU632_RS02520 0.28 +0.8
500,426 - LU632_RS02520 0.29 +2.0
500,426 - LU632_RS02520 0.29 +1.5
500,429 - LU632_RS02520 0.29 -1.6
500,494 + LU632_RS02520 0.37 +1.2
500,494 + LU632_RS02520 0.37 -0.4
500,494 + LU632_RS02520 0.37 -0.7
500,494 + LU632_RS02520 0.37 +2.7
500,495 - LU632_RS02520 0.37 -1.1
500,495 - LU632_RS02520 0.37 +1.9
500,495 - LU632_RS02520 0.37 -0.2
500,511 + LU632_RS02520 0.39 -2.1
500,857 + LU632_RS02520 0.80 +0.4
500,857 + LU632_RS02520 0.80 -1.5
500,858 - LU632_RS02520 0.80 -0.5
500,959 + +0.3
500,959 + +1.7
501,051 + +0.9
501,117 + +2.9
501,117 + -2.8
501,205 + -1.0
501,206 - -0.7
501,247 + deoB LU632_RS02525 0.11 -2.4
501,247 + deoB LU632_RS02525 0.11 -1.7
501,248 - deoB LU632_RS02525 0.12 -0.8
501,248 - deoB LU632_RS02525 0.12 +0.4
501,368 + deoB LU632_RS02525 0.21 -0.1
501,397 + deoB LU632_RS02525 0.24 -0.1
501,453 - deoB LU632_RS02525 0.28 +0.5
501,586 + deoB LU632_RS02525 0.39 -0.6
501,586 + deoB LU632_RS02525 0.39 -1.1
501,586 + deoB LU632_RS02525 0.39 -1.1
501,586 + deoB LU632_RS02525 0.39 -1.5
501,587 - deoB LU632_RS02525 0.39 -1.0
501,587 - deoB LU632_RS02525 0.39 +0.5
501,612 - deoB LU632_RS02525 0.41 -0.8
501,612 - deoB LU632_RS02525 0.41 -0.1
501,677 + deoB LU632_RS02525 0.47 -1.6
501,722 + deoB LU632_RS02525 0.50 -2.3
501,722 + deoB LU632_RS02525 0.50 -2.4
501,723 - deoB LU632_RS02525 0.50 +2.5
501,724 + deoB LU632_RS02525 0.50 +1.7
501,724 + deoB LU632_RS02525 0.50 -1.6
501,724 + deoB LU632_RS02525 0.50 +0.5
501,725 - deoB LU632_RS02525 0.50 +0.2
501,725 - deoB LU632_RS02525 0.50 -1.8
501,826 + deoB LU632_RS02525 0.59 -2.9
501,827 - deoB LU632_RS02525 0.59 -1.1
501,897 - deoB LU632_RS02525 0.65 -0.7
501,913 + deoB LU632_RS02525 0.66 -2.5
501,914 - deoB LU632_RS02525 0.66 +1.5
501,914 - deoB LU632_RS02525 0.66 -2.6
501,914 - deoB LU632_RS02525 0.66 -0.1

Or see this region's nucleotide sequence