Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02505 and LU632_RS02510 overlap by 4 nucleotides LU632_RS02510 and deoC are separated by 274 nucleotides
LU632_RS02505: LU632_RS02505 - DUF6363 domain-containing protein, at 497,380 to 498,342
_RS02505
LU632_RS02510: LU632_RS02510 - TatD family hydrolase, at 498,339 to 499,115
_RS02510
LU632_RS02515: deoC - deoxyribose-phosphate aldolase, at 499,390 to 500,169
deoC
Position (kb) 498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.390 kb on - strand at 497.391 kb on + strand at 497.392 kb on - strand at 497.587 kb on + strand, within LU632_RS02505 at 497.589 kb on + strand, within LU632_RS02505 at 497.589 kb on + strand, within LU632_RS02505 at 497.607 kb on + strand, within LU632_RS02505 at 497.609 kb on + strand, within LU632_RS02505 at 497.610 kb on - strand, within LU632_RS02505 at 497.610 kb on - strand, within LU632_RS02505 at 497.610 kb on - strand, within LU632_RS02505 at 497.740 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.807 kb on - strand, within LU632_RS02505 at 497.807 kb on - strand, within LU632_RS02505 at 498.009 kb on + strand, within LU632_RS02505 at 498.010 kb on - strand, within LU632_RS02505 at 498.034 kb on + strand, within LU632_RS02505 at 498.035 kb on - strand, within LU632_RS02505 at 498.035 kb on - strand, within LU632_RS02505 at 498.055 kb on - strand, within LU632_RS02505 at 498.118 kb on - strand, within LU632_RS02505 at 498.118 kb on - strand, within LU632_RS02505 at 498.118 kb on - strand, within LU632_RS02505 at 498.158 kb on - strand, within LU632_RS02505 at 498.281 kb on + strand at 498.282 kb on - strand at 498.282 kb on - strand at 498.320 kb on - strand at 498.516 kb on + strand, within LU632_RS02510 at 498.555 kb on + strand, within LU632_RS02510 at 498.588 kb on + strand, within LU632_RS02510 at 498.588 kb on + strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.590 kb on + strand, within LU632_RS02510 at 498.591 kb on - strand, within LU632_RS02510 at 498.721 kb on + strand, within LU632_RS02510 at 498.722 kb on - strand, within LU632_RS02510 at 498.722 kb on - strand, within LU632_RS02510 at 498.889 kb on - strand, within LU632_RS02510 at 499.092 kb on - strand at 499.109 kb on + strand at 499.110 kb on - strand at 499.209 kb on + strand at 499.209 kb on + strand at 499.210 kb on - strand at 499.214 kb on + strand at 499.214 kb on + strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.306 kb on + strand at 499.307 kb on - strand at 499.307 kb on - strand at 499.358 kb on + strand at 499.359 kb on - strand at 499.530 kb on + strand, within deoC at 499.530 kb on + strand, within deoC at 499.531 kb on - strand, within deoC at 499.531 kb on - strand, within deoC at 499.534 kb on + strand, within deoC at 499.884 kb on + strand, within deoC at 500.053 kb on - strand, within deoC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 497,389 + +0.8 497,389 + +1.2 497,389 + -1.0 497,389 + +2.1 497,389 + -0.8 497,389 + +0.6 497,390 - +0.0 497,391 + +2.8 497,392 - -0.8 497,587 + LU632_RS02505 0.21 +0.8 497,589 + LU632_RS02505 0.22 +1.7 497,589 + LU632_RS02505 0.22 -2.6 497,607 + LU632_RS02505 0.24 +1.5 497,609 + LU632_RS02505 0.24 +1.4 497,610 - LU632_RS02505 0.24 +0.2 497,610 - LU632_RS02505 0.24 -0.5 497,610 - LU632_RS02505 0.24 -0.2 497,740 + LU632_RS02505 0.37 +0.9 497,806 + LU632_RS02505 0.44 +1.0 497,806 + LU632_RS02505 0.44 -1.0 497,806 + LU632_RS02505 0.44 +0.4 497,806 + LU632_RS02505 0.44 +2.3 497,806 + LU632_RS02505 0.44 -0.8 497,807 - LU632_RS02505 0.44 +0.9 497,807 - LU632_RS02505 0.44 +0.2 498,009 + LU632_RS02505 0.65 +0.9 498,010 - LU632_RS02505 0.65 +2.5 498,034 + LU632_RS02505 0.68 +1.0 498,035 - LU632_RS02505 0.68 +7.0 498,035 - LU632_RS02505 0.68 -1.1 498,055 - LU632_RS02505 0.70 -2.0 498,118 - LU632_RS02505 0.77 -1.3 498,118 - LU632_RS02505 0.77 -1.3 498,118 - LU632_RS02505 0.77 +1.6 498,158 - LU632_RS02505 0.81 -0.0 498,281 + +0.4 498,282 - +0.6 498,282 - +1.2 498,320 - +2.5 498,516 + LU632_RS02510 0.23 -0.6 498,555 + LU632_RS02510 0.28 -0.5 498,588 + LU632_RS02510 0.32 -2.5 498,588 + LU632_RS02510 0.32 +1.1 498,589 - LU632_RS02510 0.32 -0.1 498,589 - LU632_RS02510 0.32 -0.2 498,589 - LU632_RS02510 0.32 -1.5 498,589 - LU632_RS02510 0.32 +1.1 498,589 - LU632_RS02510 0.32 +0.5 498,590 + LU632_RS02510 0.32 -3.1 498,591 - LU632_RS02510 0.32 -2.8 498,721 + LU632_RS02510 0.49 -1.2 498,722 - LU632_RS02510 0.49 +0.1 498,722 - LU632_RS02510 0.49 +0.0 498,889 - LU632_RS02510 0.71 -0.7 499,092 - +0.3 499,109 + -1.3 499,110 - -0.1 499,209 + +0.8 499,209 + +1.2 499,210 - +2.5 499,214 + -3.0 499,214 + +2.9 499,215 - -0.5 499,215 - +0.4 499,215 - -1.6 499,306 + -2.9 499,307 - -2.2 499,307 - +0.1 499,358 + -1.6 499,359 - +0.0 499,530 + deoC LU632_RS02515 0.18 +1.8 499,530 + deoC LU632_RS02515 0.18 +1.2 499,531 - deoC LU632_RS02515 0.18 -1.0 499,531 - deoC LU632_RS02515 0.18 -0.2 499,534 + deoC LU632_RS02515 0.18 +0.1 499,884 + deoC LU632_RS02515 0.63 -1.1 500,053 - deoC LU632_RS02515 0.85 +0.1
Or see this region's nucleotide sequence