Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02445 and LU632_RS02450 are separated by 56 nucleotides LU632_RS02450 and LU632_RS02455 are separated by 53 nucleotides LU632_RS02455 and LU632_RS02460 overlap by 19 nucleotides LU632_RS02460 and LU632_RS02465 are separated by 276 nucleotides
LU632_RS02445: LU632_RS02445 - ABC transporter permease, at 487,583 to 488,419
_RS02445
LU632_RS02450: LU632_RS02450 - hypothetical protein, at 488,476 to 488,580
_RS02450
LU632_RS02455: LU632_RS02455 - DDE-type integrase/transposase/recombinase, at 488,634 to 488,976
_RS02455
LU632_RS02460: LU632_RS02460 - IS481 family transposase, at 488,958 to 489,500
_RS02460
LU632_RS02465: LU632_RS02465 - IS256 family transposase, at 489,777 to 490,985
_RS02465
Position (kb) 488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 487.946 kb on + strand, within LU632_RS02445 at 487.947 kb on - strand, within LU632_RS02445 at 487.999 kb on + strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.077 kb on - strand, within LU632_RS02445 at 488.077 kb on - strand, within LU632_RS02445 at 488.099 kb on - strand, within LU632_RS02445 at 488.166 kb on - strand, within LU632_RS02445 at 488.166 kb on - strand, within LU632_RS02445 at 488.206 kb on + strand, within LU632_RS02445 at 488.206 kb on + strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.249 kb on + strand, within LU632_RS02445 at 488.250 kb on - strand, within LU632_RS02445 at 488.277 kb on - strand, within LU632_RS02445 at 488.277 kb on - strand, within LU632_RS02445 at 488.280 kb on + strand, within LU632_RS02445 at 488.280 kb on + strand, within LU632_RS02445 at 488.315 kb on - strand, within LU632_RS02445 at 488.315 kb on - strand, within LU632_RS02445 at 488.337 kb on + strand at 488.337 kb on + strand at 488.338 kb on - strand at 488.359 kb on - strand at 488.361 kb on + strand at 488.378 kb on - strand at 488.398 kb on + strand at 488.398 kb on + strand at 488.398 kb on + strand at 488.477 kb on + strand at 488.528 kb on + strand, within LU632_RS02450 at 488.550 kb on + strand, within LU632_RS02450 at 488.670 kb on + strand, within LU632_RS02455 at 488.681 kb on + strand, within LU632_RS02455 at 488.684 kb on + strand, within LU632_RS02455 at 488.833 kb on - strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.138 kb on + strand, within LU632_RS02460 at 489.247 kb on - strand, within LU632_RS02460 at 489.248 kb on + strand, within LU632_RS02460 at 489.248 kb on + strand, within LU632_RS02460 at 489.249 kb on - strand, within LU632_RS02460 at 489.285 kb on - strand, within LU632_RS02460 at 489.360 kb on + strand, within LU632_RS02460 at 489.506 kb on + strand at 489.507 kb on - strand at 489.525 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.528 kb on - strand at 489.528 kb on - strand at 489.693 kb on + strand at 489.693 kb on + strand at 489.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 487,946 + LU632_RS02445 0.43 -0.0 487,947 - LU632_RS02445 0.43 -0.8 487,999 + LU632_RS02445 0.50 +2.5 488,000 - LU632_RS02445 0.50 -1.4 488,000 - LU632_RS02445 0.50 +1.5 488,000 - LU632_RS02445 0.50 -1.4 488,077 - LU632_RS02445 0.59 +0.2 488,077 - LU632_RS02445 0.59 -1.7 488,099 - LU632_RS02445 0.62 +0.3 488,166 - LU632_RS02445 0.70 -1.0 488,166 - LU632_RS02445 0.70 +1.2 488,206 + LU632_RS02445 0.74 -1.7 488,206 + LU632_RS02445 0.74 -1.2 488,207 - LU632_RS02445 0.75 +1.0 488,207 - LU632_RS02445 0.75 -0.7 488,207 - LU632_RS02445 0.75 -1.1 488,249 + LU632_RS02445 0.80 +0.6 488,250 - LU632_RS02445 0.80 -2.3 488,277 - LU632_RS02445 0.83 +0.8 488,277 - LU632_RS02445 0.83 +0.0 488,280 + LU632_RS02445 0.83 +0.2 488,280 + LU632_RS02445 0.83 +1.5 488,315 - LU632_RS02445 0.87 +3.9 488,315 - LU632_RS02445 0.87 +1.1 488,337 + +1.4 488,337 + +0.5 488,338 - +0.2 488,359 - -1.4 488,361 + -2.1 488,378 - -0.3 488,398 + -0.1 488,398 + -1.8 488,398 + +1.2 488,477 + -0.3 488,528 + LU632_RS02450 0.50 +1.3 488,550 + LU632_RS02450 0.70 +0.2 488,670 + LU632_RS02455 0.10 +1.5 488,681 + LU632_RS02455 0.14 -1.9 488,684 + LU632_RS02455 0.15 -0.5 488,833 - LU632_RS02455 0.58 -2.2 488,872 + LU632_RS02455 0.69 +1.5 488,872 + LU632_RS02455 0.69 +1.6 488,872 + LU632_RS02455 0.69 +0.6 488,873 - LU632_RS02455 0.70 -0.5 488,873 - LU632_RS02455 0.70 -3.0 488,873 - LU632_RS02455 0.70 +1.1 488,873 - LU632_RS02455 0.70 +0.9 488,873 - LU632_RS02455 0.70 +0.6 489,055 - LU632_RS02460 0.18 -0.5 489,055 - LU632_RS02460 0.18 +1.2 489,055 - LU632_RS02460 0.18 -0.2 489,055 - LU632_RS02460 0.18 +0.8 489,138 + LU632_RS02460 0.33 -1.0 489,247 - LU632_RS02460 0.53 -0.2 489,248 + LU632_RS02460 0.53 +0.0 489,248 + LU632_RS02460 0.53 -0.5 489,249 - LU632_RS02460 0.54 -1.0 489,285 - LU632_RS02460 0.60 -1.2 489,360 + LU632_RS02460 0.74 -2.1 489,506 + -1.3 489,507 - +0.6 489,525 + +1.5 489,527 + -1.4 489,527 + -1.1 489,527 + -1.2 489,527 + +1.5 489,528 - +0.2 489,528 - -2.1 489,693 + -1.1 489,693 + -3.1 489,764 - -3.6
Or see this region's nucleotide sequence