Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01840 and LU632_RS01845 are separated by 194 nucleotides LU632_RS01845 and LU632_RS01850 are separated by 115 nucleotides LU632_RS01850 and aspA are separated by 4 nucleotides aspA and LU632_RS01860 are separated by 347 nucleotides
LU632_RS01840: LU632_RS01840 - protein-disulfide reductase DsbD, at 353,674 to 355,362
_RS01840
LU632_RS01845: LU632_RS01845 - anaerobic C4-dicarboxylate transporter, at 355,557 to 356,858
_RS01845
LU632_RS01850: LU632_RS01850 - hypothetical protein, at 356,974 to 357,117
_RS01850
LU632_RS01855: aspA - aspartate ammonia-lyase, at 357,122 to 357,357
aspA
LU632_RS01860: LU632_RS01860 - FxsA family protein, at 357,705 to 358,160
_RS01860
Position (kb) 355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 354.705 kb on + strand, within LU632_RS01840 at 354.705 kb on + strand, within LU632_RS01840 at 354.706 kb on - strand, within LU632_RS01840 at 354.706 kb on - strand, within LU632_RS01840 at 354.708 kb on - strand, within LU632_RS01840 at 354.708 kb on - strand, within LU632_RS01840 at 354.708 kb on - strand, within LU632_RS01840 at 354.731 kb on + strand, within LU632_RS01840 at 354.731 kb on + strand, within LU632_RS01840 at 354.731 kb on + strand, within LU632_RS01840 at 354.731 kb on + strand, within LU632_RS01840 at 354.732 kb on - strand, within LU632_RS01840 at 354.732 kb on - strand, within LU632_RS01840 at 354.809 kb on + strand, within LU632_RS01840 at 354.809 kb on + strand, within LU632_RS01840 at 354.810 kb on - strand, within LU632_RS01840 at 354.965 kb on - strand, within LU632_RS01840 at 354.965 kb on - strand, within LU632_RS01840 at 354.985 kb on - strand, within LU632_RS01840 at 355.205 kb on + strand at 355.211 kb on + strand at 355.212 kb on - strand at 355.212 kb on - strand at 355.212 kb on - strand at 355.212 kb on - strand at 355.242 kb on + strand at 355.243 kb on - strand at 355.421 kb on - strand at 355.423 kb on + strand at 355.423 kb on + strand at 355.424 kb on - strand at 355.488 kb on - strand at 355.489 kb on + strand at 355.489 kb on + strand at 355.572 kb on - strand at 355.614 kb on + strand at 355.628 kb on + strand at 355.628 kb on + strand at 355.629 kb on - strand at 355.905 kb on + strand, within LU632_RS01845 at 355.905 kb on + strand, within LU632_RS01845 at 355.905 kb on + strand, within LU632_RS01845 at 355.906 kb on - strand, within LU632_RS01845 at 355.906 kb on - strand, within LU632_RS01845 at 355.926 kb on - strand, within LU632_RS01845 at 355.967 kb on + strand, within LU632_RS01845 at 355.967 kb on + strand, within LU632_RS01845 at 356.042 kb on + strand, within LU632_RS01845 at 356.043 kb on - strand, within LU632_RS01845 at 356.070 kb on + strand, within LU632_RS01845 at 356.070 kb on + strand, within LU632_RS01845 at 356.071 kb on - strand, within LU632_RS01845 at 356.091 kb on + strand, within LU632_RS01845 at 356.521 kb on - strand, within LU632_RS01845 at 356.521 kb on - strand, within LU632_RS01845 at 356.567 kb on + strand, within LU632_RS01845 at 356.567 kb on + strand, within LU632_RS01845 at 356.568 kb on - strand, within LU632_RS01845 at 356.568 kb on - strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.573 kb on + strand, within LU632_RS01845 at 356.700 kb on - strand, within LU632_RS01845 at 356.736 kb on + strand at 356.841 kb on + strand at 356.841 kb on + strand at 356.842 kb on - strand at 356.842 kb on - strand at 356.842 kb on - strand at 356.902 kb on - strand at 356.962 kb on + strand at 356.963 kb on - strand at 357.040 kb on + strand, within LU632_RS01850 at 357.041 kb on - strand, within LU632_RS01850 at 357.041 kb on - strand, within LU632_RS01850 at 357.041 kb on - strand, within LU632_RS01850 at 357.041 kb on - strand, within LU632_RS01850 at 357.041 kb on - strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.043 kb on - strand, within LU632_RS01850 at 357.043 kb on - strand, within LU632_RS01850 at 357.043 kb on - strand, within LU632_RS01850 at 357.118 kb on + strand at 357.118 kb on + strand at 357.119 kb on - strand at 357.119 kb on - strand at 357.119 kb on - strand at 357.119 kb on - strand at 357.119 kb on - strand at 357.119 kb on - strand at 357.121 kb on - strand at 357.121 kb on - strand at 357.121 kb on - strand at 357.140 kb on - strand at 357.229 kb on + strand, within aspA at 357.242 kb on - strand, within aspA at 357.280 kb on + strand, within aspA at 357.281 kb on - strand, within aspA at 357.291 kb on + strand, within aspA at 357.295 kb on - strand, within aspA at 357.295 kb on - strand, within aspA at 357.467 kb on - strand at 357.485 kb on + strand at 357.486 kb on - strand at 357.508 kb on + strand at 357.531 kb on - strand at 357.531 kb on - strand at 357.564 kb on - strand at 357.566 kb on + strand at 357.566 kb on + strand at 357.635 kb on - strand at 357.722 kb on + strand at 357.781 kb on + strand, within LU632_RS01860 at 357.781 kb on + strand, within LU632_RS01860 at 357.782 kb on - strand, within LU632_RS01860 at 357.806 kb on - strand, within LU632_RS01860
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 354,705 + LU632_RS01840 0.61 -0.9 354,705 + LU632_RS01840 0.61 -0.8 354,706 - LU632_RS01840 0.61 +3.5 354,706 - LU632_RS01840 0.61 -0.1 354,708 - LU632_RS01840 0.61 +0.0 354,708 - LU632_RS01840 0.61 +1.8 354,708 - LU632_RS01840 0.61 -1.1 354,731 + LU632_RS01840 0.63 +0.9 354,731 + LU632_RS01840 0.63 -0.1 354,731 + LU632_RS01840 0.63 +0.2 354,731 + LU632_RS01840 0.63 +0.9 354,732 - LU632_RS01840 0.63 -1.9 354,732 - LU632_RS01840 0.63 +0.9 354,809 + LU632_RS01840 0.67 +0.6 354,809 + LU632_RS01840 0.67 -0.6 354,810 - LU632_RS01840 0.67 +3.1 354,965 - LU632_RS01840 0.76 +0.5 354,965 - LU632_RS01840 0.76 -2.2 354,985 - LU632_RS01840 0.78 -0.3 355,205 + +2.0 355,211 + +0.2 355,212 - +0.0 355,212 - -0.1 355,212 - -2.6 355,212 - -0.6 355,242 + -0.2 355,243 - +0.5 355,421 - +0.8 355,423 + +0.5 355,423 + +0.0 355,424 - +0.3 355,488 - +0.2 355,489 + +2.5 355,489 + -0.3 355,572 - -1.8 355,614 + -0.7 355,628 + -3.5 355,628 + -0.2 355,629 - +2.0 355,905 + LU632_RS01845 0.27 +0.5 355,905 + LU632_RS01845 0.27 -1.5 355,905 + LU632_RS01845 0.27 +0.8 355,906 - LU632_RS01845 0.27 -0.5 355,906 - LU632_RS01845 0.27 +0.5 355,926 - LU632_RS01845 0.28 -1.4 355,967 + LU632_RS01845 0.31 -0.2 355,967 + LU632_RS01845 0.31 -0.4 356,042 + LU632_RS01845 0.37 +3.3 356,043 - LU632_RS01845 0.37 +0.9 356,070 + LU632_RS01845 0.39 -2.8 356,070 + LU632_RS01845 0.39 +2.0 356,071 - LU632_RS01845 0.39 +0.5 356,091 + LU632_RS01845 0.41 +1.7 356,521 - LU632_RS01845 0.74 +0.1 356,521 - LU632_RS01845 0.74 +1.5 356,567 + LU632_RS01845 0.78 +2.4 356,567 + LU632_RS01845 0.78 +0.5 356,568 - LU632_RS01845 0.78 -1.0 356,568 - LU632_RS01845 0.78 +1.0 356,569 + LU632_RS01845 0.78 -0.7 356,569 + LU632_RS01845 0.78 +0.8 356,569 + LU632_RS01845 0.78 +0.9 356,569 + LU632_RS01845 0.78 -0.1 356,569 + LU632_RS01845 0.78 -2.0 356,569 + LU632_RS01845 0.78 +0.5 356,569 + LU632_RS01845 0.78 +0.3 356,570 - LU632_RS01845 0.78 +1.0 356,570 - LU632_RS01845 0.78 +0.6 356,570 - LU632_RS01845 0.78 -1.7 356,570 - LU632_RS01845 0.78 +0.0 356,570 - LU632_RS01845 0.78 -0.5 356,570 - LU632_RS01845 0.78 +2.4 356,570 - LU632_RS01845 0.78 -0.9 356,570 - LU632_RS01845 0.78 +3.2 356,573 + LU632_RS01845 0.78 -0.1 356,700 - LU632_RS01845 0.88 -1.1 356,736 + +1.2 356,841 + -1.2 356,841 + -0.3 356,842 - +0.7 356,842 - -2.0 356,842 - +3.6 356,902 - +0.5 356,962 + -2.2 356,963 - -0.3 357,040 + LU632_RS01850 0.46 +0.7 357,041 - LU632_RS01850 0.47 -0.4 357,041 - LU632_RS01850 0.47 -2.5 357,041 - LU632_RS01850 0.47 +0.4 357,041 - LU632_RS01850 0.47 -0.7 357,041 - LU632_RS01850 0.47 +0.1 357,042 + LU632_RS01850 0.47 +1.8 357,042 + LU632_RS01850 0.47 +1.1 357,042 + LU632_RS01850 0.47 -1.6 357,042 + LU632_RS01850 0.47 -1.9 357,042 + LU632_RS01850 0.47 +1.0 357,042 + LU632_RS01850 0.47 -2.2 357,043 - LU632_RS01850 0.48 -0.1 357,043 - LU632_RS01850 0.48 -2.2 357,043 - LU632_RS01850 0.48 -1.8 357,118 + +0.5 357,118 + -0.8 357,119 - +0.2 357,119 - +0.5 357,119 - -0.6 357,119 - +0.5 357,119 - -0.3 357,119 - +1.8 357,121 - +2.5 357,121 - +1.7 357,121 - +1.5 357,140 - -1.9 357,229 + aspA LU632_RS01855 0.45 -0.7 357,242 - aspA LU632_RS01855 0.51 +0.2 357,280 + aspA LU632_RS01855 0.67 -0.9 357,281 - aspA LU632_RS01855 0.67 -0.6 357,291 + aspA LU632_RS01855 0.72 -0.5 357,295 - aspA LU632_RS01855 0.73 -2.0 357,295 - aspA LU632_RS01855 0.73 +0.3 357,467 - -0.3 357,485 + -0.1 357,486 - +1.7 357,508 + +1.0 357,531 - -1.3 357,531 - -1.1 357,564 - +1.7 357,566 + +0.1 357,566 + -0.8 357,635 - +1.2 357,722 + +1.5 357,781 + LU632_RS01860 0.17 +0.7 357,781 + LU632_RS01860 0.17 +0.7 357,782 - LU632_RS01860 0.17 -2.0 357,806 - LU632_RS01860 0.22 -1.2
Or see this region's nucleotide sequence