Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01520 and LU632_RS01525 overlap by 4 nucleotides LU632_RS01525 and LU632_RS01530 are separated by 331 nucleotides LU632_RS01530 and LU632_RS01535 are separated by 72 nucleotides LU632_RS01535 and LU632_RS01540 overlap by 1 nucleotides
LU632_RS01520: LU632_RS01520 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 307,491 to 308,333
_RS01520
LU632_RS01525: LU632_RS01525 - hypothetical protein, at 308,330 to 308,536
_RS01525
LU632_RS01530: LU632_RS01530 - hypothetical protein, at 308,868 to 309,110
_RS01530
LU632_RS01535: LU632_RS01535 - hypothetical protein, at 309,183 to 309,566
_RS01535
LU632_RS01540: LU632_RS01540 - replication endonuclease, at 309,566 to 312,061
_RS01540
Position (kb) 309
310 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 308.212 kb on - strand, within LU632_RS01520 at 308.329 kb on + strand at 308.330 kb on - strand at 308.505 kb on - strand, within LU632_RS01525 at 308.505 kb on - strand, within LU632_RS01525 at 308.592 kb on + strand at 308.593 kb on - strand at 308.611 kb on + strand at 308.611 kb on + strand at 308.612 kb on - strand at 308.613 kb on + strand at 308.614 kb on - strand at 308.667 kb on + strand at 308.668 kb on - strand at 308.728 kb on - strand at 308.810 kb on + strand at 308.882 kb on + strand at 308.883 kb on - strand at 308.883 kb on - strand at 308.883 kb on - strand at 309.031 kb on - strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.052 kb on - strand, within LU632_RS01530 at 309.052 kb on - strand, within LU632_RS01530 at 309.075 kb on - strand, within LU632_RS01530 at 309.203 kb on + strand at 309.255 kb on + strand, within LU632_RS01535 at 309.417 kb on + strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.564 kb on + strand at 309.564 kb on + strand at 309.565 kb on - strand at 309.671 kb on + strand at 309.671 kb on + strand at 309.674 kb on + strand at 309.675 kb on - strand at 309.675 kb on - strand at 309.675 kb on - strand at 309.683 kb on - strand at 309.749 kb on - strand at 309.749 kb on - strand at 309.773 kb on - strand at 309.838 kb on + strand, within LU632_RS01540 at 309.872 kb on + strand, within LU632_RS01540 at 310.046 kb on + strand, within LU632_RS01540 at 310.046 kb on + strand, within LU632_RS01540 at 310.047 kb on - strand, within LU632_RS01540 at 310.047 kb on - strand, within LU632_RS01540 at 310.047 kb on - strand, within LU632_RS01540 at 310.184 kb on - strand, within LU632_RS01540 at 310.236 kb on + strand, within LU632_RS01540 at 310.237 kb on - strand, within LU632_RS01540 at 310.443 kb on + strand, within LU632_RS01540 at 310.563 kb on - strand, within LU632_RS01540 at 310.563 kb on - strand, within LU632_RS01540 at 310.565 kb on + strand, within LU632_RS01540
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 308,212 - LU632_RS01520 0.86 +2.5 308,329 + -3.0 308,330 - -0.9 308,505 - LU632_RS01525 0.85 -1.0 308,505 - LU632_RS01525 0.85 -0.7 308,592 + -0.3 308,593 - +0.5 308,611 + -0.1 308,611 + -1.2 308,612 - -1.5 308,613 + -0.1 308,614 - -1.3 308,667 + -3.9 308,668 - +0.3 308,728 - +0.0 308,810 + -1.4 308,882 + -1.1 308,883 - -0.3 308,883 - -1.4 308,883 - -3.8 309,031 - LU632_RS01530 0.67 -1.7 309,051 + LU632_RS01530 0.75 -0.1 309,051 + LU632_RS01530 0.75 +1.4 309,051 + LU632_RS01530 0.75 -1.7 309,052 - LU632_RS01530 0.76 -1.5 309,052 - LU632_RS01530 0.76 +0.9 309,075 - LU632_RS01530 0.85 -1.4 309,203 + -0.1 309,255 + LU632_RS01535 0.19 -1.0 309,417 + LU632_RS01535 0.61 +1.2 309,418 - LU632_RS01535 0.61 +0.4 309,418 - LU632_RS01535 0.61 +1.1 309,418 - LU632_RS01535 0.61 -0.3 309,418 - LU632_RS01535 0.61 -1.3 309,564 + +1.1 309,564 + -0.0 309,565 - -0.3 309,671 + +1.8 309,671 + +0.5 309,674 + -0.7 309,675 - +2.5 309,675 - -1.2 309,675 - -0.5 309,683 - +2.7 309,749 - -1.1 309,749 - +1.7 309,773 - +0.1 309,838 + LU632_RS01540 0.11 -0.2 309,872 + LU632_RS01540 0.12 +0.9 310,046 + LU632_RS01540 0.19 +1.1 310,046 + LU632_RS01540 0.19 +0.5 310,047 - LU632_RS01540 0.19 +0.5 310,047 - LU632_RS01540 0.19 +0.7 310,047 - LU632_RS01540 0.19 +0.2 310,184 - LU632_RS01540 0.25 +0.7 310,236 + LU632_RS01540 0.27 +0.7 310,237 - LU632_RS01540 0.27 +0.2 310,443 + LU632_RS01540 0.35 +0.9 310,563 - LU632_RS01540 0.40 -1.3 310,563 - LU632_RS01540 0.40 +0.1 310,565 + LU632_RS01540 0.40 +1.5
Or see this region's nucleotide sequence