Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt crcB and LU632_RS01325 are separated by 76 nucleotides LU632_RS01325 and LU632_RS01330 are separated by 11 nucleotides LU632_RS01330 and LU632_RS01335 are separated by 6 nucleotides LU632_RS01335 and LU632_RS01340 are separated by 570 nucleotides
LU632_RS01320: crcB - fluoride efflux transporter CrcB, at 273,679 to 274,059
crcB
LU632_RS01325: LU632_RS01325 - MFS transporter, at 274,136 to 274,643
_RS01325
LU632_RS01330: LU632_RS01330 - sugar porter family MFS transporter, at 274,655 to 274,951
_RS01330
LU632_RS01335: LU632_RS01335 - MFS transporter, at 274,958 to 275,260
_RS01335
LU632_RS01340: LU632_RS01340 - hypothetical protein, at 275,831 to 282,493
_RS01340
Position (kb) 274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 273.820 kb on - strand, within crcB at 273.897 kb on - strand, within crcB at 273.897 kb on - strand, within crcB at 273.906 kb on + strand, within crcB at 274.057 kb on + strand at 274.084 kb on - strand at 274.084 kb on - strand at 274.084 kb on - strand at 274.132 kb on + strand at 274.202 kb on + strand, within LU632_RS01325 at 274.492 kb on + strand, within LU632_RS01325 at 274.492 kb on + strand, within LU632_RS01325 at 274.530 kb on + strand, within LU632_RS01325 at 274.530 kb on + strand, within LU632_RS01325 at 274.530 kb on + strand, within LU632_RS01325 at 274.534 kb on - strand, within LU632_RS01325 at 274.534 kb on - strand, within LU632_RS01325 at 274.568 kb on + strand, within LU632_RS01325 at 274.625 kb on + strand at 274.648 kb on - strand at 274.671 kb on - strand at 274.671 kb on - strand at 274.728 kb on + strand, within LU632_RS01330 at 274.728 kb on + strand, within LU632_RS01330 at 274.729 kb on - strand, within LU632_RS01330 at 274.729 kb on - strand, within LU632_RS01330 at 274.741 kb on + strand, within LU632_RS01330 at 274.741 kb on + strand, within LU632_RS01330 at 274.744 kb on + strand, within LU632_RS01330 at 274.882 kb on + strand, within LU632_RS01330 at 274.882 kb on + strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.969 kb on + strand at 274.983 kb on - strand at 275.095 kb on + strand, within LU632_RS01335 at 275.095 kb on + strand, within LU632_RS01335 at 275.096 kb on - strand, within LU632_RS01335 at 275.159 kb on + strand, within LU632_RS01335 at 275.176 kb on - strand, within LU632_RS01335 at 275.176 kb on - strand, within LU632_RS01335 at 275.176 kb on - strand, within LU632_RS01335 at 275.221 kb on + strand, within LU632_RS01335 at 275.299 kb on + strand at 275.300 kb on - strand at 275.303 kb on + strand at 275.303 kb on + strand at 275.303 kb on + strand at 275.303 kb on + strand at 275.304 kb on - strand at 275.304 kb on - strand at 275.304 kb on - strand at 275.304 kb on - strand at 275.304 kb on - strand at 275.332 kb on - strand at 275.332 kb on - strand at 275.332 kb on - strand at 275.332 kb on - strand at 275.332 kb on - strand at 275.332 kb on - strand at 275.333 kb on + strand at 275.333 kb on + strand at 275.334 kb on - strand at 275.334 kb on - strand at 275.334 kb on - strand at 275.772 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 273,820 - crcB LU632_RS01320 0.37 -0.2 273,897 - crcB LU632_RS01320 0.57 +1.7 273,897 - crcB LU632_RS01320 0.57 +0.1 273,906 + crcB LU632_RS01320 0.60 -1.5 274,057 + -1.4 274,084 - +0.9 274,084 - -2.7 274,084 - -1.5 274,132 + +0.3 274,202 + LU632_RS01325 0.13 +3.8 274,492 + LU632_RS01325 0.70 +0.4 274,492 + LU632_RS01325 0.70 +0.1 274,530 + LU632_RS01325 0.78 -0.0 274,530 + LU632_RS01325 0.78 -1.7 274,530 + LU632_RS01325 0.78 -0.0 274,534 - LU632_RS01325 0.78 +1.1 274,534 - LU632_RS01325 0.78 +0.6 274,568 + LU632_RS01325 0.85 -1.0 274,625 + -3.5 274,648 - -1.8 274,671 - -2.8 274,671 - +1.3 274,728 + LU632_RS01330 0.25 +0.4 274,728 + LU632_RS01330 0.25 -1.6 274,729 - LU632_RS01330 0.25 -0.7 274,729 - LU632_RS01330 0.25 +0.3 274,741 + LU632_RS01330 0.29 +0.4 274,741 + LU632_RS01330 0.29 -1.4 274,744 + LU632_RS01330 0.30 +1.2 274,882 + LU632_RS01330 0.76 +1.5 274,882 + LU632_RS01330 0.76 -2.3 274,883 - LU632_RS01330 0.77 +1.7 274,883 - LU632_RS01330 0.77 +0.4 274,883 - LU632_RS01330 0.77 +0.8 274,883 - LU632_RS01330 0.77 +0.7 274,883 - LU632_RS01330 0.77 +0.5 274,969 + +0.3 274,983 - -1.0 275,095 + LU632_RS01335 0.45 -0.3 275,095 + LU632_RS01335 0.45 -0.2 275,096 - LU632_RS01335 0.46 +0.6 275,159 + LU632_RS01335 0.66 -2.8 275,176 - LU632_RS01335 0.72 -0.8 275,176 - LU632_RS01335 0.72 -0.7 275,176 - LU632_RS01335 0.72 -0.3 275,221 + LU632_RS01335 0.87 -2.6 275,299 + +0.7 275,300 - +0.2 275,303 + +0.3 275,303 + +1.5 275,303 + +2.3 275,303 + +0.1 275,304 - +2.3 275,304 - -0.6 275,304 - +0.9 275,304 - -0.5 275,304 - +1.1 275,332 - +1.3 275,332 - -2.3 275,332 - -0.9 275,332 - +1.0 275,332 - -0.1 275,332 - +0.5 275,333 + +0.4 275,333 + -0.1 275,334 - +0.6 275,334 - +0.5 275,334 - +0.9 275,772 - +1.5
Or see this region's nucleotide sequence