Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00820 and LU632_RS00825 are separated by 210 nucleotides LU632_RS00825 and LU632_RS00830 overlap by 4 nucleotides
LU632_RS00820: LU632_RS00820 - extracellular solute-binding protein, at 178,270 to 179,520
_RS00820
LU632_RS00825: LU632_RS00825 - ROK family protein, at 179,731 to 180,672
_RS00825
LU632_RS00830: LU632_RS00830 - SIS domain-containing protein, at 180,669 to 181,694
_RS00830
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 178.781 kb on + strand, within LU632_RS00820 at 178.782 kb on - strand, within LU632_RS00820 at 178.922 kb on + strand, within LU632_RS00820 at 178.923 kb on - strand, within LU632_RS00820 at 179.075 kb on + strand, within LU632_RS00820 at 179.076 kb on - strand, within LU632_RS00820 at 179.076 kb on - strand, within LU632_RS00820 at 179.085 kb on - strand, within LU632_RS00820 at 179.089 kb on - strand, within LU632_RS00820 at 179.239 kb on - strand, within LU632_RS00820 at 179.446 kb on + strand at 179.447 kb on - strand at 179.482 kb on + strand at 179.486 kb on + strand at 179.487 kb on - strand at 179.536 kb on + strand at 179.635 kb on - strand at 179.639 kb on - strand at 179.640 kb on + strand at 179.641 kb on - strand at 179.664 kb on + strand at 179.665 kb on - strand at 179.665 kb on - strand at 179.665 kb on - strand at 179.718 kb on + strand at 179.718 kb on + strand at 179.719 kb on - strand at 179.719 kb on - strand at 179.719 kb on - strand at 179.722 kb on + strand at 179.911 kb on + strand, within LU632_RS00825 at 179.911 kb on + strand, within LU632_RS00825 at 179.911 kb on + strand, within LU632_RS00825 at 179.911 kb on + strand, within LU632_RS00825 at 179.911 kb on + strand, within LU632_RS00825 at 179.921 kb on - strand, within LU632_RS00825 at 179.934 kb on - strand, within LU632_RS00825 at 179.934 kb on - strand, within LU632_RS00825 at 179.949 kb on + strand, within LU632_RS00825 at 179.950 kb on - strand, within LU632_RS00825 at 179.989 kb on + strand, within LU632_RS00825 at 180.068 kb on - strand, within LU632_RS00825 at 180.310 kb on + strand, within LU632_RS00825 at 180.310 kb on + strand, within LU632_RS00825 at 180.311 kb on - strand, within LU632_RS00825 at 180.672 kb on + strand at 180.673 kb on - strand at 180.697 kb on + strand at 180.698 kb on - strand at 180.767 kb on + strand at 180.767 kb on + strand at 180.774 kb on + strand, within LU632_RS00830 at 180.774 kb on + strand, within LU632_RS00830 at 180.775 kb on - strand, within LU632_RS00830 at 180.829 kb on + strand, within LU632_RS00830 at 180.829 kb on + strand, within LU632_RS00830 at 180.830 kb on - strand, within LU632_RS00830 at 180.830 kb on - strand, within LU632_RS00830 at 181.069 kb on - strand, within LU632_RS00830 at 181.137 kb on + strand, within LU632_RS00830 at 181.140 kb on - strand, within LU632_RS00830 at 181.143 kb on - strand, within LU632_RS00830 at 181.183 kb on + strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.185 kb on + strand, within LU632_RS00830 at 181.186 kb on - strand, within LU632_RS00830 at 181.225 kb on + strand, within LU632_RS00830 at 181.226 kb on - strand, within LU632_RS00830 at 181.226 kb on - strand, within LU632_RS00830 at 181.241 kb on + strand, within LU632_RS00830 at 181.334 kb on + strand, within LU632_RS00830 at 181.370 kb on + strand, within LU632_RS00830 at 181.370 kb on + strand, within LU632_RS00830 at 181.495 kb on - strand, within LU632_RS00830 at 181.495 kb on - strand, within LU632_RS00830 at 181.563 kb on + strand, within LU632_RS00830 at 181.564 kb on - strand, within LU632_RS00830 at 181.564 kb on - strand, within LU632_RS00830 at 181.617 kb on - strand at 181.617 kb on - strand at 181.618 kb on + strand at 181.618 kb on + strand at 181.619 kb on - strand at 181.619 kb on - strand at 181.619 kb on - strand at 181.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 178,781 + LU632_RS00820 0.41 +0.1 178,782 - LU632_RS00820 0.41 +0.9 178,922 + LU632_RS00820 0.52 -0.7 178,923 - LU632_RS00820 0.52 +0.1 179,075 + LU632_RS00820 0.64 -0.9 179,076 - LU632_RS00820 0.64 +1.3 179,076 - LU632_RS00820 0.64 -1.3 179,085 - LU632_RS00820 0.65 +0.4 179,089 - LU632_RS00820 0.65 +0.0 179,239 - LU632_RS00820 0.77 -1.2 179,446 + -0.0 179,447 - +0.4 179,482 + -0.3 179,486 + +1.1 179,487 - +0.5 179,536 + +0.6 179,635 - -0.4 179,639 - +0.5 179,640 + -1.1 179,641 - -0.5 179,664 + -0.1 179,665 - +0.5 179,665 - -1.3 179,665 - -1.5 179,718 + -0.1 179,718 + +0.1 179,719 - -0.3 179,719 - +1.8 179,719 - -0.8 179,722 + -1.4 179,911 + LU632_RS00825 0.19 +0.3 179,911 + LU632_RS00825 0.19 +0.2 179,911 + LU632_RS00825 0.19 -2.2 179,911 + LU632_RS00825 0.19 -0.2 179,911 + LU632_RS00825 0.19 -0.4 179,921 - LU632_RS00825 0.20 -2.9 179,934 - LU632_RS00825 0.22 -1.3 179,934 - LU632_RS00825 0.22 -1.3 179,949 + LU632_RS00825 0.23 -1.9 179,950 - LU632_RS00825 0.23 +1.3 179,989 + LU632_RS00825 0.27 +0.0 180,068 - LU632_RS00825 0.36 +2.5 180,310 + LU632_RS00825 0.61 +2.1 180,310 + LU632_RS00825 0.61 -0.5 180,311 - LU632_RS00825 0.62 +0.1 180,672 + -0.5 180,673 - +0.5 180,697 + +1.9 180,698 - -0.9 180,767 + -1.4 180,767 + -1.7 180,774 + LU632_RS00830 0.10 -0.1 180,774 + LU632_RS00830 0.10 +0.4 180,775 - LU632_RS00830 0.10 +1.2 180,829 + LU632_RS00830 0.16 -0.3 180,829 + LU632_RS00830 0.16 -1.8 180,830 - LU632_RS00830 0.16 +2.3 180,830 - LU632_RS00830 0.16 -0.8 181,069 - LU632_RS00830 0.39 +1.2 181,137 + LU632_RS00830 0.46 +2.1 181,140 - LU632_RS00830 0.46 +0.8 181,143 - LU632_RS00830 0.46 -0.0 181,183 + LU632_RS00830 0.50 -0.5 181,184 - LU632_RS00830 0.50 -2.2 181,184 - LU632_RS00830 0.50 -1.2 181,184 - LU632_RS00830 0.50 -1.4 181,184 - LU632_RS00830 0.50 -0.2 181,185 + LU632_RS00830 0.50 +0.1 181,186 - LU632_RS00830 0.50 -0.7 181,225 + LU632_RS00830 0.54 +0.1 181,226 - LU632_RS00830 0.54 +5.5 181,226 - LU632_RS00830 0.54 +0.6 181,241 + LU632_RS00830 0.56 +0.5 181,334 + LU632_RS00830 0.65 +0.3 181,370 + LU632_RS00830 0.68 -2.3 181,370 + LU632_RS00830 0.68 -0.0 181,495 - LU632_RS00830 0.81 -0.1 181,495 - LU632_RS00830 0.81 -0.1 181,563 + LU632_RS00830 0.87 +0.1 181,564 - LU632_RS00830 0.87 -0.4 181,564 - LU632_RS00830 0.87 -0.7 181,617 - +1.0 181,617 - -0.6 181,618 + -0.0 181,618 + -0.0 181,619 - +0.5 181,619 - -1.5 181,619 - -1.1 181,619 - +1.5
Or see this region's nucleotide sequence