Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00700 and LU632_RS00705 overlap by 13 nucleotides LU632_RS00705 and tssB are separated by 124 nucleotides tssB and tssC are separated by 17 nucleotides
LU632_RS00700: LU632_RS00700 - fimbrial biogenesis outer membrane usher protein, at 146,905 to 149,541
_RS00700
LU632_RS00705: LU632_RS00705 - type 1 fimbrial protein, at 149,529 to 150,110
_RS00705
LU632_RS00710: tssB - type VI secretion system contractile sheath small subunit, at 150,235 to 150,768
tssB
LU632_RS00715: tssC - type VI secretion system contractile sheath large subunit, at 150,786 to 152,285
tssC
Position (kb) 150
151 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 149.319 kb on - strand at 149.322 kb on + strand at 149.323 kb on - strand at 149.349 kb on + strand at 149.350 kb on - strand at 149.429 kb on + strand at 149.432 kb on - strand at 149.432 kb on - strand at 149.432 kb on - strand at 149.435 kb on + strand at 149.435 kb on + strand at 149.639 kb on - strand, within LU632_RS00705 at 149.664 kb on + strand, within LU632_RS00705 at 149.694 kb on - strand, within LU632_RS00705 at 149.787 kb on - strand, within LU632_RS00705 at 150.021 kb on + strand, within LU632_RS00705 at 150.033 kb on + strand, within LU632_RS00705 at 150.299 kb on + strand, within tssB at 150.374 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.641 kb on - strand, within tssB at 150.795 kb on - strand at 150.795 kb on - strand at 150.809 kb on + strand at 151.029 kb on - strand, within tssC at 151.104 kb on - strand, within tssC at 151.124 kb on + strand, within tssC at 151.148 kb on + strand, within tssC at 151.166 kb on + strand, within tssC at 151.167 kb on - strand, within tssC at 151.224 kb on + strand, within tssC at 151.224 kb on + strand, within tssC at 151.295 kb on + strand, within tssC at 151.296 kb on - strand, within tssC at 151.316 kb on - strand, within tssC at 151.316 kb on - strand, within tssC at 151.459 kb on - strand, within tssC at 151.548 kb on - strand, within tssC at 151.548 kb on - strand, within tssC at 151.556 kb on + strand, within tssC at 151.575 kb on - strand, within tssC at 151.607 kb on + strand, within tssC at 151.614 kb on + strand, within tssC at 151.614 kb on + strand, within tssC at 151.615 kb on - strand, within tssC at 151.615 kb on - strand, within tssC at 151.730 kb on - strand, within tssC at 151.740 kb on - strand, within tssC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 149,319 - -0.3 149,322 + +0.3 149,323 - +1.0 149,349 + -1.2 149,350 - -1.6 149,429 + +0.2 149,432 - +0.1 149,432 - +0.2 149,432 - +0.7 149,435 + +1.4 149,435 + +0.9 149,639 - LU632_RS00705 0.19 -0.9 149,664 + LU632_RS00705 0.23 -0.1 149,694 - LU632_RS00705 0.28 -1.2 149,787 - LU632_RS00705 0.44 -0.3 150,021 + LU632_RS00705 0.85 +3.2 150,033 + LU632_RS00705 0.87 -1.2 150,299 + tssB LU632_RS00710 0.12 +0.2 150,374 + tssB LU632_RS00710 0.26 -0.1 150,640 + tssB LU632_RS00710 0.76 -1.5 150,640 + tssB LU632_RS00710 0.76 -0.3 150,640 + tssB LU632_RS00710 0.76 -0.3 150,641 - tssB LU632_RS00710 0.76 -1.9 150,795 - +0.2 150,795 - -1.8 150,809 + -0.2 151,029 - tssC LU632_RS00715 0.16 -1.3 151,104 - tssC LU632_RS00715 0.21 +0.5 151,124 + tssC LU632_RS00715 0.23 +0.2 151,148 + tssC LU632_RS00715 0.24 +0.9 151,166 + tssC LU632_RS00715 0.25 -1.2 151,167 - tssC LU632_RS00715 0.25 +0.2 151,224 + tssC LU632_RS00715 0.29 +0.5 151,224 + tssC LU632_RS00715 0.29 -1.2 151,295 + tssC LU632_RS00715 0.34 -0.1 151,296 - tssC LU632_RS00715 0.34 -1.7 151,316 - tssC LU632_RS00715 0.35 -0.8 151,316 - tssC LU632_RS00715 0.35 +0.2 151,459 - tssC LU632_RS00715 0.45 +0.9 151,548 - tssC LU632_RS00715 0.51 +2.6 151,548 - tssC LU632_RS00715 0.51 +1.1 151,556 + tssC LU632_RS00715 0.51 -1.8 151,575 - tssC LU632_RS00715 0.53 +1.7 151,607 + tssC LU632_RS00715 0.55 -0.0 151,614 + tssC LU632_RS00715 0.55 -0.6 151,614 + tssC LU632_RS00715 0.55 -2.6 151,615 - tssC LU632_RS00715 0.55 +0.7 151,615 - tssC LU632_RS00715 0.55 -0.8 151,730 - tssC LU632_RS00715 0.63 +0.8 151,740 - tssC LU632_RS00715 0.64 +0.9
Or see this region's nucleotide sequence