Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctE and LU632_RS00520 are separated by 34 nucleotides LU632_RS00520 and LU632_RS00525 are separated by 70 nucleotides
LU632_RS00515: sctE - type III secretion system translocon subunit SctE, at 104,470 to 106,341
sctE
LU632_RS00520: LU632_RS00520 - hypothetical protein, at 106,376 to 107,581
_RS00520
LU632_RS00525: LU632_RS00525 - IpaD/SipD/SspD family type III secretion system needle tip protein, at 107,652 to 108,830
_RS00525
Position (kb) 106
107
108 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 105.381 kb on + strand, within sctE at 105.591 kb on + strand, within sctE at 105.727 kb on - strand, within sctE at 105.812 kb on + strand, within sctE at 105.812 kb on + strand, within sctE at 105.813 kb on - strand, within sctE at 105.845 kb on + strand, within sctE at 105.859 kb on + strand, within sctE at 105.952 kb on - strand, within sctE at 106.247 kb on + strand at 106.414 kb on + strand at 106.683 kb on + strand, within LU632_RS00520 at 106.684 kb on - strand, within LU632_RS00520 at 106.684 kb on - strand, within LU632_RS00520 at 106.738 kb on + strand, within LU632_RS00520 at 106.752 kb on + strand, within LU632_RS00520 at 106.758 kb on + strand, within LU632_RS00520 at 106.774 kb on + strand, within LU632_RS00520 at 106.793 kb on + strand, within LU632_RS00520 at 106.793 kb on + strand, within LU632_RS00520 at 106.794 kb on - strand, within LU632_RS00520 at 106.794 kb on - strand, within LU632_RS00520 at 106.862 kb on - strand, within LU632_RS00520 at 106.927 kb on + strand, within LU632_RS00520 at 106.927 kb on + strand, within LU632_RS00520 at 106.928 kb on - strand, within LU632_RS00520 at 106.931 kb on - strand, within LU632_RS00520 at 106.992 kb on + strand, within LU632_RS00520 at 106.992 kb on + strand, within LU632_RS00520 at 107.011 kb on + strand, within LU632_RS00520 at 107.011 kb on + strand, within LU632_RS00520 at 107.012 kb on - strand, within LU632_RS00520 at 107.060 kb on - strand, within LU632_RS00520 at 107.062 kb on + strand, within LU632_RS00520 at 107.065 kb on + strand, within LU632_RS00520 at 107.065 kb on + strand, within LU632_RS00520 at 107.134 kb on + strand, within LU632_RS00520 at 107.236 kb on - strand, within LU632_RS00520 at 108.250 kb on - strand, within LU632_RS00525 at 108.373 kb on + strand, within LU632_RS00525 at 108.453 kb on - strand, within LU632_RS00525 at 108.529 kb on + strand, within LU632_RS00525 at 108.549 kb on + strand, within LU632_RS00525
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 105,381 + sctE LU632_RS00515 0.49 +2.3 105,591 + sctE LU632_RS00515 0.60 +1.1 105,727 - sctE LU632_RS00515 0.67 -0.0 105,812 + sctE LU632_RS00515 0.72 +0.2 105,812 + sctE LU632_RS00515 0.72 -2.5 105,813 - sctE LU632_RS00515 0.72 -1.5 105,845 + sctE LU632_RS00515 0.73 -2.2 105,859 + sctE LU632_RS00515 0.74 +1.3 105,952 - sctE LU632_RS00515 0.79 +0.2 106,247 + -1.8 106,414 + +0.3 106,683 + LU632_RS00520 0.25 -0.8 106,684 - LU632_RS00520 0.26 -1.8 106,684 - LU632_RS00520 0.26 -2.7 106,738 + LU632_RS00520 0.30 -0.4 106,752 + LU632_RS00520 0.31 +0.4 106,758 + LU632_RS00520 0.32 +3.6 106,774 + LU632_RS00520 0.33 -1.1 106,793 + LU632_RS00520 0.35 -1.0 106,793 + LU632_RS00520 0.35 -1.6 106,794 - LU632_RS00520 0.35 +2.0 106,794 - LU632_RS00520 0.35 -0.5 106,862 - LU632_RS00520 0.40 +1.0 106,927 + LU632_RS00520 0.46 +0.1 106,927 + LU632_RS00520 0.46 -0.4 106,928 - LU632_RS00520 0.46 -1.3 106,931 - LU632_RS00520 0.46 -0.8 106,992 + LU632_RS00520 0.51 +1.5 106,992 + LU632_RS00520 0.51 -1.3 107,011 + LU632_RS00520 0.53 +0.5 107,011 + LU632_RS00520 0.53 -1.8 107,012 - LU632_RS00520 0.53 +0.7 107,060 - LU632_RS00520 0.57 -0.3 107,062 + LU632_RS00520 0.57 +0.2 107,065 + LU632_RS00520 0.57 +0.9 107,065 + LU632_RS00520 0.57 -2.1 107,134 + LU632_RS00520 0.63 -1.9 107,236 - LU632_RS00520 0.71 +0.3 108,250 - LU632_RS00525 0.51 -2.2 108,373 + LU632_RS00525 0.61 -0.4 108,453 - LU632_RS00525 0.68 -0.5 108,529 + LU632_RS00525 0.74 -1.0 108,549 + LU632_RS00525 0.76 -0.5
Or see this region's nucleotide sequence