Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00305

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00300 and LU632_RS00305 are separated by 156 nucleotidesLU632_RS00305 and LU632_RS00310 are separated by 121 nucleotides LU632_RS00300: LU632_RS00300 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 60,568 to 61,599 _RS00300 LU632_RS00305: LU632_RS00305 - glycosyl hydrolase family 8, at 61,756 to 62,675 _RS00305 LU632_RS00310: LU632_RS00310 - DUF2235 domain-containing protein, at 62,797 to 64,257 _RS00310 Position (kb) 61 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.890 kb on - strand, within LU632_RS00300at 60.918 kb on + strand, within LU632_RS00300at 60.918 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.026 kb on - strand, within LU632_RS00300at 61.181 kb on + strand, within LU632_RS00300at 61.181 kb on + strand, within LU632_RS00300at 61.181 kb on + strand, within LU632_RS00300at 61.183 kb on + strand, within LU632_RS00300at 61.184 kb on - strand, within LU632_RS00300at 61.243 kb on - strand, within LU632_RS00300at 61.274 kb on + strand, within LU632_RS00300at 61.275 kb on - strand, within LU632_RS00300at 61.277 kb on - strand, within LU632_RS00300at 61.284 kb on + strand, within LU632_RS00300at 61.387 kb on + strand, within LU632_RS00300at 61.406 kb on + strand, within LU632_RS00300at 61.427 kb on - strand, within LU632_RS00300at 61.430 kb on - strand, within LU632_RS00300at 61.430 kb on - strand, within LU632_RS00300at 61.557 kb on + strandat 61.727 kb on + strandat 61.727 kb on + strandat 61.728 kb on - strandat 61.728 kb on - strandat 61.854 kb on + strand, within LU632_RS00305at 61.854 kb on + strand, within LU632_RS00305at 61.855 kb on - strand, within LU632_RS00305at 61.857 kb on + strand, within LU632_RS00305at 61.858 kb on - strand, within LU632_RS00305at 61.859 kb on + strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.909 kb on - strand, within LU632_RS00305at 61.956 kb on - strand, within LU632_RS00305at 62.071 kb on - strand, within LU632_RS00305at 62.077 kb on + strand, within LU632_RS00305at 62.145 kb on - strand, within LU632_RS00305at 62.145 kb on - strand, within LU632_RS00305at 62.155 kb on + strand, within LU632_RS00305at 62.188 kb on - strand, within LU632_RS00305at 62.188 kb on - strand, within LU632_RS00305at 62.188 kb on - strand, within LU632_RS00305at 62.392 kb on + strand, within LU632_RS00305at 62.392 kb on + strand, within LU632_RS00305at 62.393 kb on - strand, within LU632_RS00305at 62.416 kb on + strand, within LU632_RS00305at 62.482 kb on + strand, within LU632_RS00305at 62.491 kb on - strand, within LU632_RS00305at 62.523 kb on - strand, within LU632_RS00305at 62.523 kb on - strand, within LU632_RS00305at 62.525 kb on + strand, within LU632_RS00305at 62.526 kb on - strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.622 kb on + strandat 62.626 kb on - strandat 62.691 kb on - strandat 62.762 kb on + strandat 62.762 kb on + strandat 62.762 kb on + strandat 62.775 kb on - strandat 62.797 kb on - strandat 62.856 kb on + strandat 62.974 kb on + strand, within LU632_RS00310at 62.975 kb on - strand, within LU632_RS00310at 62.975 kb on - strand, within LU632_RS00310at 62.997 kb on + strand, within LU632_RS00310at 63.004 kb on + strand, within LU632_RS00310at 63.052 kb on + strand, within LU632_RS00310at 63.053 kb on - strand, within LU632_RS00310at 63.063 kb on + strand, within LU632_RS00310at 63.066 kb on - strand, within LU632_RS00310at 63.069 kb on + strand, within LU632_RS00310at 63.069 kb on + strand, within LU632_RS00310at 63.069 kb on + strand, within LU632_RS00310at 63.069 kb on + strand, within LU632_RS00310at 63.070 kb on - strand, within LU632_RS00310at 63.070 kb on - strand, within LU632_RS00310at 63.297 kb on + strand, within LU632_RS00310at 63.297 kb on + strand, within LU632_RS00310at 63.297 kb on + strand, within LU632_RS00310at 63.298 kb on - strand, within LU632_RS00310at 63.298 kb on - strand, within LU632_RS00310at 63.353 kb on - strand, within LU632_RS00310at 63.425 kb on + strand, within LU632_RS00310at 63.464 kb on + strand, within LU632_RS00310

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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60,889 + LU632_RS00300 0.31 +0.9
60,889 + LU632_RS00300 0.31 +1.5
60,889 + LU632_RS00300 0.31 -0.2
60,889 + LU632_RS00300 0.31 +2.1
60,889 + LU632_RS00300 0.31 -0.1
60,890 - LU632_RS00300 0.31 +0.4
60,918 + LU632_RS00300 0.34 -2.5
60,918 + LU632_RS00300 0.34 -0.2
61,025 + LU632_RS00300 0.44 -0.2
61,025 + LU632_RS00300 0.44 +0.2
61,025 + LU632_RS00300 0.44 -1.4
61,025 + LU632_RS00300 0.44 +0.5
61,025 + LU632_RS00300 0.44 -0.1
61,026 - LU632_RS00300 0.44 -0.2
61,181 + LU632_RS00300 0.59 +3.2
61,181 + LU632_RS00300 0.59 -0.1
61,181 + LU632_RS00300 0.59 +0.8
61,183 + LU632_RS00300 0.60 -0.8
61,184 - LU632_RS00300 0.60 +0.3
61,243 - LU632_RS00300 0.65 +0.2
61,274 + LU632_RS00300 0.68 +3.3
61,275 - LU632_RS00300 0.69 -0.1
61,277 - LU632_RS00300 0.69 -1.7
61,284 + LU632_RS00300 0.69 +0.4
61,387 + LU632_RS00300 0.79 +1.1
61,406 + LU632_RS00300 0.81 +0.1
61,427 - LU632_RS00300 0.83 +1.1
61,430 - LU632_RS00300 0.84 -1.3
61,430 - LU632_RS00300 0.84 -1.9
61,557 + -0.9
61,727 + -0.0
61,727 + +1.9
61,728 - +0.5
61,728 - +2.5
61,854 + LU632_RS00305 0.11 -1.9
61,854 + LU632_RS00305 0.11 -2.2
61,855 - LU632_RS00305 0.11 +0.6
61,857 + LU632_RS00305 0.11 -0.3
61,858 - LU632_RS00305 0.11 -0.7
61,859 + LU632_RS00305 0.11 -1.1
61,860 - LU632_RS00305 0.11 -0.2
61,860 - LU632_RS00305 0.11 -1.5
61,860 - LU632_RS00305 0.11 -1.0
61,860 - LU632_RS00305 0.11 -1.3
61,909 - LU632_RS00305 0.17 -1.4
61,956 - LU632_RS00305 0.22 -1.1
62,071 - LU632_RS00305 0.34 +2.7
62,077 + LU632_RS00305 0.35 +1.8
62,145 - LU632_RS00305 0.42 +2.1
62,145 - LU632_RS00305 0.42 +1.0
62,155 + LU632_RS00305 0.43 -2.3
62,188 - LU632_RS00305 0.47 -1.9
62,188 - LU632_RS00305 0.47 -1.4
62,188 - LU632_RS00305 0.47 +0.1
62,392 + LU632_RS00305 0.69 +0.5
62,392 + LU632_RS00305 0.69 +0.7
62,393 - LU632_RS00305 0.69 +0.4
62,416 + LU632_RS00305 0.72 +1.8
62,482 + LU632_RS00305 0.79 -0.4
62,491 - LU632_RS00305 0.80 -2.4
62,523 - LU632_RS00305 0.83 -0.4
62,523 - LU632_RS00305 0.83 +0.1
62,525 + LU632_RS00305 0.84 -1.7
62,526 - LU632_RS00305 0.84 -0.7
62,537 + LU632_RS00305 0.85 +0.4
62,537 + LU632_RS00305 0.85 +0.9
62,537 + LU632_RS00305 0.85 +1.2
62,537 + LU632_RS00305 0.85 -2.0
62,537 + LU632_RS00305 0.85 +1.4
62,538 - LU632_RS00305 0.85 +2.6
62,538 - LU632_RS00305 0.85 +0.9
62,538 - LU632_RS00305 0.85 +0.4
62,538 - LU632_RS00305 0.85 +2.5
62,538 - LU632_RS00305 0.85 -2.2
62,622 + +0.9
62,626 - +0.4
62,691 - +2.3
62,762 + -2.8
62,762 + +1.9
62,762 + +1.5
62,775 - -1.8
62,797 - -0.0
62,856 + +1.1
62,974 + LU632_RS00310 0.12 -1.6
62,975 - LU632_RS00310 0.12 -0.3
62,975 - LU632_RS00310 0.12 +1.4
62,997 + LU632_RS00310 0.14 +0.9
63,004 + LU632_RS00310 0.14 +1.7
63,052 + LU632_RS00310 0.17 -0.9
63,053 - LU632_RS00310 0.18 +2.1
63,063 + LU632_RS00310 0.18 -1.8
63,066 - LU632_RS00310 0.18 -1.1
63,069 + LU632_RS00310 0.19 -0.4
63,069 + LU632_RS00310 0.19 +1.9
63,069 + LU632_RS00310 0.19 -0.7
63,069 + LU632_RS00310 0.19 +1.0
63,070 - LU632_RS00310 0.19 +0.5
63,070 - LU632_RS00310 0.19 -2.1
63,297 + LU632_RS00310 0.34 +1.2
63,297 + LU632_RS00310 0.34 -1.8
63,297 + LU632_RS00310 0.34 -1.1
63,298 - LU632_RS00310 0.34 -1.5
63,298 - LU632_RS00310 0.34 -1.0
63,353 - LU632_RS00310 0.38 -1.2
63,425 + LU632_RS00310 0.43 -1.5
63,464 + LU632_RS00310 0.46 -0.0

Or see this region's nucleotide sequence