Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02448 and OHPLBJKB_02449 are separated by 143 nucleotides OHPLBJKB_02449 and OHPLBJKB_02450 are separated by 201 nucleotides
OHPLBJKB_02448: OHPLBJKB_02448 - DNA-binding protein H-NS, at 2,561,464 to 2,561,877
_02448
OHPLBJKB_02449: OHPLBJKB_02449 - UTP--glucose-1-phosphate uridylyltransferase, at 2,562,021 to 2,562,929
_02449
OHPLBJKB_02450: OHPLBJKB_02450 - Regulator of RpoS, at 2,563,131 to 2,564,144
_02450
Position (kb)
2562
2563 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2561.022 kb on + strand at 2561.044 kb on + strand at 2561.077 kb on + strand at 2561.077 kb on + strand at 2561.078 kb on - strand at 2561.105 kb on + strand at 2561.116 kb on + strand at 2561.117 kb on - strand at 2561.144 kb on + strand at 2561.191 kb on + strand at 2561.300 kb on - strand at 2561.302 kb on - strand at 2561.443 kb on + strand at 2561.752 kb on + strand, within OHPLBJKB_02448 at 2561.758 kb on + strand, within OHPLBJKB_02448 at 2561.949 kb on + strand at 2561.958 kb on + strand at 2561.958 kb on + strand at 2561.959 kb on - strand at 2562.022 kb on + strand at 2562.022 kb on + strand at 2562.022 kb on + strand at 2562.023 kb on - strand at 2562.970 kb on - strand at 2562.991 kb on - strand at 2562.992 kb on + strand at 2562.992 kb on + strand at 2563.041 kb on - strand at 2563.053 kb on + strand at 2563.053 kb on + strand at 2563.054 kb on - strand at 2563.054 kb on - strand at 2563.054 kb on - strand at 2563.054 kb on - strand at 2563.054 kb on - strand at 2563.060 kb on - strand at 2563.100 kb on + strand at 2563.101 kb on - strand at 2563.101 kb on - strand at 2563.176 kb on + strand at 2563.223 kb on - strand at 2563.233 kb on + strand, within OHPLBJKB_02450 at 2563.287 kb on + strand, within OHPLBJKB_02450 at 2563.288 kb on - strand, within OHPLBJKB_02450 at 2563.288 kb on - strand, within OHPLBJKB_02450 at 2563.343 kb on - strand, within OHPLBJKB_02450 at 2563.353 kb on + strand, within OHPLBJKB_02450 at 2563.353 kb on + strand, within OHPLBJKB_02450 at 2563.353 kb on + strand, within OHPLBJKB_02450 at 2563.354 kb on - strand, within OHPLBJKB_02450 at 2563.354 kb on - strand, within OHPLBJKB_02450 at 2563.354 kb on - strand, within OHPLBJKB_02450 at 2563.354 kb on - strand, within OHPLBJKB_02450 at 2563.354 kb on - strand, within OHPLBJKB_02450 at 2563.392 kb on + strand, within OHPLBJKB_02450 at 2563.393 kb on - strand, within OHPLBJKB_02450 at 2563.401 kb on + strand, within OHPLBJKB_02450 at 2563.402 kb on - strand, within OHPLBJKB_02450 at 2563.464 kb on + strand, within OHPLBJKB_02450 at 2563.467 kb on + strand, within OHPLBJKB_02450 at 2563.468 kb on - strand, within OHPLBJKB_02450 at 2563.492 kb on - strand, within OHPLBJKB_02450 at 2563.506 kb on + strand, within OHPLBJKB_02450 at 2563.514 kb on + strand, within OHPLBJKB_02450 at 2563.515 kb on - strand, within OHPLBJKB_02450 at 2563.622 kb on - strand, within OHPLBJKB_02450 at 2563.625 kb on + strand, within OHPLBJKB_02450 at 2563.665 kb on + strand, within OHPLBJKB_02450 at 2563.665 kb on + strand, within OHPLBJKB_02450 at 2563.665 kb on + strand, within OHPLBJKB_02450 at 2563.666 kb on - strand, within OHPLBJKB_02450 at 2563.758 kb on - strand, within OHPLBJKB_02450 at 2563.815 kb on - strand, within OHPLBJKB_02450 at 2563.852 kb on - strand, within OHPLBJKB_02450 at 2563.866 kb on - strand, within OHPLBJKB_02450 at 2563.923 kb on - strand, within OHPLBJKB_02450 at 2563.923 kb on - strand, within OHPLBJKB_02450 at 2563.923 kb on - strand, within OHPLBJKB_02450 at 2563.926 kb on + strand, within OHPLBJKB_02450 at 2563.926 kb on + strand, within OHPLBJKB_02450 at 2563.927 kb on - strand, within OHPLBJKB_02450
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 2,561,022 + +1.7 2,561,044 + +0.7 2,561,077 + -0.7 2,561,077 + +0.8 2,561,078 - +0.5 2,561,105 + +0.3 2,561,116 + +1.3 2,561,117 - +0.5 2,561,144 + -1.1 2,561,191 + +0.8 2,561,300 - +0.6 2,561,302 - +1.5 2,561,443 + -0.4 2,561,752 + OHPLBJKB_02448 0.70 -1.1 2,561,758 + OHPLBJKB_02448 0.71 -1.2 2,561,949 + +0.9 2,561,958 + -0.8 2,561,958 + +0.4 2,561,959 - +0.3 2,562,022 + +1.5 2,562,022 + +0.9 2,562,022 + +0.5 2,562,023 - +0.4 2,562,970 - +1.5 2,562,991 - -0.2 2,562,992 + +0.5 2,562,992 + +1.8 2,563,041 - -0.2 2,563,053 + +0.8 2,563,053 + +1.1 2,563,054 - -0.4 2,563,054 - -0.3 2,563,054 - -0.5 2,563,054 - -0.4 2,563,054 - -0.7 2,563,060 - -1.0 2,563,100 + -0.2 2,563,101 - +0.0 2,563,101 - +1.0 2,563,176 + -0.3 2,563,223 - +1.1 2,563,233 + OHPLBJKB_02450 0.10 -0.3 2,563,287 + OHPLBJKB_02450 0.15 -0.3 2,563,288 - OHPLBJKB_02450 0.15 -1.2 2,563,288 - OHPLBJKB_02450 0.15 -1.1 2,563,343 - OHPLBJKB_02450 0.21 -0.4 2,563,353 + OHPLBJKB_02450 0.22 +0.2 2,563,353 + OHPLBJKB_02450 0.22 -0.3 2,563,353 + OHPLBJKB_02450 0.22 -0.9 2,563,354 - OHPLBJKB_02450 0.22 -0.1 2,563,354 - OHPLBJKB_02450 0.22 +0.8 2,563,354 - OHPLBJKB_02450 0.22 -2.1 2,563,354 - OHPLBJKB_02450 0.22 -1.3 2,563,354 - OHPLBJKB_02450 0.22 -0.3 2,563,392 + OHPLBJKB_02450 0.26 +1.1 2,563,393 - OHPLBJKB_02450 0.26 +0.5 2,563,401 + OHPLBJKB_02450 0.27 +0.2 2,563,402 - OHPLBJKB_02450 0.27 -0.9 2,563,464 + OHPLBJKB_02450 0.33 +0.7 2,563,467 + OHPLBJKB_02450 0.33 -1.3 2,563,468 - OHPLBJKB_02450 0.33 -1.0 2,563,492 - OHPLBJKB_02450 0.36 +0.7 2,563,506 + OHPLBJKB_02450 0.37 -0.7 2,563,514 + OHPLBJKB_02450 0.38 -0.9 2,563,515 - OHPLBJKB_02450 0.38 +1.1 2,563,622 - OHPLBJKB_02450 0.48 +0.4 2,563,625 + OHPLBJKB_02450 0.49 +0.7 2,563,665 + OHPLBJKB_02450 0.53 +0.8 2,563,665 + OHPLBJKB_02450 0.53 -0.4 2,563,665 + OHPLBJKB_02450 0.53 +0.7 2,563,666 - OHPLBJKB_02450 0.53 -0.8 2,563,758 - OHPLBJKB_02450 0.62 -1.2 2,563,815 - OHPLBJKB_02450 0.67 -0.3 2,563,852 - OHPLBJKB_02450 0.71 -0.9 2,563,866 - OHPLBJKB_02450 0.72 -0.8 2,563,923 - OHPLBJKB_02450 0.78 -0.1 2,563,923 - OHPLBJKB_02450 0.78 +0.2 2,563,923 - OHPLBJKB_02450 0.78 +0.0 2,563,926 + OHPLBJKB_02450 0.78 +0.7 2,563,926 + OHPLBJKB_02450 0.78 +0.6 2,563,927 - OHPLBJKB_02450 0.79 +0.7
Or see this region's nucleotide sequence