Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02449

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02448 and OHPLBJKB_02449 are separated by 143 nucleotidesOHPLBJKB_02449 and OHPLBJKB_02450 are separated by 201 nucleotides OHPLBJKB_02448: OHPLBJKB_02448 - DNA-binding protein H-NS, at 2,561,464 to 2,561,877 _02448 OHPLBJKB_02449: OHPLBJKB_02449 - UTP--glucose-1-phosphate uridylyltransferase, at 2,562,021 to 2,562,929 _02449 OHPLBJKB_02450: OHPLBJKB_02450 - Regulator of RpoS, at 2,563,131 to 2,564,144 _02450 Position (kb) 2562 2563Strain fitness (log2 ratio) -2 -1 0 1 2at 2561.022 kb on + strandat 2561.044 kb on + strandat 2561.077 kb on + strandat 2561.077 kb on + strandat 2561.078 kb on - strandat 2561.105 kb on + strandat 2561.116 kb on + strandat 2561.117 kb on - strandat 2561.144 kb on + strandat 2561.191 kb on + strandat 2561.300 kb on - strandat 2561.302 kb on - strandat 2561.443 kb on + strandat 2561.752 kb on + strand, within OHPLBJKB_02448at 2561.758 kb on + strand, within OHPLBJKB_02448at 2561.949 kb on + strandat 2561.958 kb on + strandat 2561.958 kb on + strandat 2561.959 kb on - strandat 2562.022 kb on + strandat 2562.022 kb on + strandat 2562.022 kb on + strandat 2562.023 kb on - strandat 2562.970 kb on - strandat 2562.991 kb on - strandat 2562.992 kb on + strandat 2562.992 kb on + strandat 2563.041 kb on - strandat 2563.053 kb on + strandat 2563.053 kb on + strandat 2563.054 kb on - strandat 2563.054 kb on - strandat 2563.054 kb on - strandat 2563.054 kb on - strandat 2563.054 kb on - strandat 2563.060 kb on - strandat 2563.100 kb on + strandat 2563.101 kb on - strandat 2563.101 kb on - strandat 2563.176 kb on + strandat 2563.223 kb on - strandat 2563.233 kb on + strand, within OHPLBJKB_02450at 2563.287 kb on + strand, within OHPLBJKB_02450at 2563.288 kb on - strand, within OHPLBJKB_02450at 2563.288 kb on - strand, within OHPLBJKB_02450at 2563.343 kb on - strand, within OHPLBJKB_02450at 2563.353 kb on + strand, within OHPLBJKB_02450at 2563.353 kb on + strand, within OHPLBJKB_02450at 2563.353 kb on + strand, within OHPLBJKB_02450at 2563.354 kb on - strand, within OHPLBJKB_02450at 2563.354 kb on - strand, within OHPLBJKB_02450at 2563.354 kb on - strand, within OHPLBJKB_02450at 2563.354 kb on - strand, within OHPLBJKB_02450at 2563.354 kb on - strand, within OHPLBJKB_02450at 2563.392 kb on + strand, within OHPLBJKB_02450at 2563.393 kb on - strand, within OHPLBJKB_02450at 2563.401 kb on + strand, within OHPLBJKB_02450at 2563.402 kb on - strand, within OHPLBJKB_02450at 2563.464 kb on + strand, within OHPLBJKB_02450at 2563.467 kb on + strand, within OHPLBJKB_02450at 2563.468 kb on - strand, within OHPLBJKB_02450at 2563.492 kb on - strand, within OHPLBJKB_02450at 2563.506 kb on + strand, within OHPLBJKB_02450at 2563.514 kb on + strand, within OHPLBJKB_02450at 2563.515 kb on - strand, within OHPLBJKB_02450at 2563.622 kb on - strand, within OHPLBJKB_02450at 2563.625 kb on + strand, within OHPLBJKB_02450at 2563.665 kb on + strand, within OHPLBJKB_02450at 2563.665 kb on + strand, within OHPLBJKB_02450at 2563.665 kb on + strand, within OHPLBJKB_02450at 2563.666 kb on - strand, within OHPLBJKB_02450at 2563.758 kb on - strand, within OHPLBJKB_02450at 2563.815 kb on - strand, within OHPLBJKB_02450at 2563.852 kb on - strand, within OHPLBJKB_02450at 2563.866 kb on - strand, within OHPLBJKB_02450at 2563.923 kb on - strand, within OHPLBJKB_02450at 2563.923 kb on - strand, within OHPLBJKB_02450at 2563.923 kb on - strand, within OHPLBJKB_02450at 2563.926 kb on + strand, within OHPLBJKB_02450at 2563.926 kb on + strand, within OHPLBJKB_02450at 2563.927 kb on - strand, within OHPLBJKB_02450

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,561,022 + +1.7
2,561,044 + +0.7
2,561,077 + -0.7
2,561,077 + +0.8
2,561,078 - +0.5
2,561,105 + +0.3
2,561,116 + +1.3
2,561,117 - +0.5
2,561,144 + -1.1
2,561,191 + +0.8
2,561,300 - +0.6
2,561,302 - +1.5
2,561,443 + -0.4
2,561,752 + OHPLBJKB_02448 0.70 -1.1
2,561,758 + OHPLBJKB_02448 0.71 -1.2
2,561,949 + +0.9
2,561,958 + -0.8
2,561,958 + +0.4
2,561,959 - +0.3
2,562,022 + +1.5
2,562,022 + +0.9
2,562,022 + +0.5
2,562,023 - +0.4
2,562,970 - +1.5
2,562,991 - -0.2
2,562,992 + +0.5
2,562,992 + +1.8
2,563,041 - -0.2
2,563,053 + +0.8
2,563,053 + +1.1
2,563,054 - -0.4
2,563,054 - -0.3
2,563,054 - -0.5
2,563,054 - -0.4
2,563,054 - -0.7
2,563,060 - -1.0
2,563,100 + -0.2
2,563,101 - +0.0
2,563,101 - +1.0
2,563,176 + -0.3
2,563,223 - +1.1
2,563,233 + OHPLBJKB_02450 0.10 -0.3
2,563,287 + OHPLBJKB_02450 0.15 -0.3
2,563,288 - OHPLBJKB_02450 0.15 -1.2
2,563,288 - OHPLBJKB_02450 0.15 -1.1
2,563,343 - OHPLBJKB_02450 0.21 -0.4
2,563,353 + OHPLBJKB_02450 0.22 +0.2
2,563,353 + OHPLBJKB_02450 0.22 -0.3
2,563,353 + OHPLBJKB_02450 0.22 -0.9
2,563,354 - OHPLBJKB_02450 0.22 -0.1
2,563,354 - OHPLBJKB_02450 0.22 +0.8
2,563,354 - OHPLBJKB_02450 0.22 -2.1
2,563,354 - OHPLBJKB_02450 0.22 -1.3
2,563,354 - OHPLBJKB_02450 0.22 -0.3
2,563,392 + OHPLBJKB_02450 0.26 +1.1
2,563,393 - OHPLBJKB_02450 0.26 +0.5
2,563,401 + OHPLBJKB_02450 0.27 +0.2
2,563,402 - OHPLBJKB_02450 0.27 -0.9
2,563,464 + OHPLBJKB_02450 0.33 +0.7
2,563,467 + OHPLBJKB_02450 0.33 -1.3
2,563,468 - OHPLBJKB_02450 0.33 -1.0
2,563,492 - OHPLBJKB_02450 0.36 +0.7
2,563,506 + OHPLBJKB_02450 0.37 -0.7
2,563,514 + OHPLBJKB_02450 0.38 -0.9
2,563,515 - OHPLBJKB_02450 0.38 +1.1
2,563,622 - OHPLBJKB_02450 0.48 +0.4
2,563,625 + OHPLBJKB_02450 0.49 +0.7
2,563,665 + OHPLBJKB_02450 0.53 +0.8
2,563,665 + OHPLBJKB_02450 0.53 -0.4
2,563,665 + OHPLBJKB_02450 0.53 +0.7
2,563,666 - OHPLBJKB_02450 0.53 -0.8
2,563,758 - OHPLBJKB_02450 0.62 -1.2
2,563,815 - OHPLBJKB_02450 0.67 -0.3
2,563,852 - OHPLBJKB_02450 0.71 -0.9
2,563,866 - OHPLBJKB_02450 0.72 -0.8
2,563,923 - OHPLBJKB_02450 0.78 -0.1
2,563,923 - OHPLBJKB_02450 0.78 +0.2
2,563,923 - OHPLBJKB_02450 0.78 +0.0
2,563,926 + OHPLBJKB_02450 0.78 +0.7
2,563,926 + OHPLBJKB_02450 0.78 +0.6
2,563,927 - OHPLBJKB_02450 0.79 +0.7

Or see this region's nucleotide sequence