Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01664

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01662 and OHPLBJKB_01663 are separated by 14 nucleotidesOHPLBJKB_01663 and OHPLBJKB_01664 are separated by 180 nucleotidesOHPLBJKB_01664 and OHPLBJKB_01665 are separated by 461 nucleotides OHPLBJKB_01662: OHPLBJKB_01662 - dTDP-4-dehydrorhamnose reductase, at 1,750,980 to 1,751,870 _01662 OHPLBJKB_01663: OHPLBJKB_01663 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,751,885 to 1,752,439 _01663 OHPLBJKB_01664: OHPLBJKB_01664 - UDP-glucose 6-dehydrogenase, at 1,752,620 to 1,753,786 _01664 OHPLBJKB_01665: OHPLBJKB_01665 - IS1 family transposase IS1X2, at 1,754,248 to 1,754,535 _01665 Position (kb) 1752 1753 1754Strain fitness (log2 ratio) -2 -1 0 1 2at 1751.664 kb on + strand, within OHPLBJKB_01662at 1751.868 kb on + strandat 1751.893 kb on + strandat 1751.894 kb on - strandat 1751.896 kb on + strandat 1751.896 kb on + strandat 1751.906 kb on - strandat 1751.989 kb on + strand, within OHPLBJKB_01663at 1752.205 kb on + strand, within OHPLBJKB_01663at 1752.278 kb on + strand, within OHPLBJKB_01663at 1752.279 kb on - strand, within OHPLBJKB_01663at 1752.294 kb on - strand, within OHPLBJKB_01663at 1752.294 kb on - strand, within OHPLBJKB_01663at 1752.294 kb on - strand, within OHPLBJKB_01663at 1752.294 kb on - strand, within OHPLBJKB_01663at 1752.409 kb on + strandat 1752.409 kb on + strandat 1752.410 kb on - strandat 1752.410 kb on - strandat 1752.410 kb on - strandat 1752.410 kb on - strandat 1752.429 kb on + strandat 1752.429 kb on + strandat 1752.429 kb on + strandat 1752.429 kb on + strandat 1752.429 kb on + strandat 1752.429 kb on + strandat 1752.429 kb on + strandat 1752.430 kb on - strandat 1752.430 kb on - strandat 1752.430 kb on - strandat 1752.431 kb on + strandat 1752.432 kb on - strandat 1752.434 kb on - strandat 1752.434 kb on - strandat 1752.437 kb on + strandat 1752.437 kb on + strandat 1752.437 kb on + strandat 1752.437 kb on + strandat 1752.438 kb on - strandat 1752.438 kb on - strandat 1752.438 kb on - strandat 1752.441 kb on + strandat 1752.442 kb on - strandat 1752.546 kb on + strandat 1752.564 kb on + strandat 1752.564 kb on + strandat 1752.564 kb on + strandat 1753.818 kb on + strandat 1753.818 kb on + strandat 1753.818 kb on + strandat 1753.819 kb on - strandat 1753.819 kb on - strandat 1753.819 kb on - strandat 1753.819 kb on - strandat 1753.965 kb on + strandat 1753.965 kb on + strandat 1753.977 kb on - strandat 1753.977 kb on - strandat 1754.224 kb on + strandat 1754.399 kb on - strand, within OHPLBJKB_01665at 1754.421 kb on + strand, within OHPLBJKB_01665at 1754.421 kb on + strand, within OHPLBJKB_01665at 1754.422 kb on - strand, within OHPLBJKB_01665at 1754.519 kb on + strandat 1754.519 kb on + strandat 1754.557 kb on + strandat 1754.557 kb on + strandat 1754.574 kb on + strandat 1754.676 kb on + strandat 1754.677 kb on - strandat 1754.680 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,751,664 + OHPLBJKB_01662 0.77 -2.1
1,751,868 + +1.0
1,751,893 + -2.3
1,751,894 - -1.7
1,751,896 + -1.2
1,751,896 + -0.9
1,751,906 - -0.2
1,751,989 + OHPLBJKB_01663 0.19 -1.7
1,752,205 + OHPLBJKB_01663 0.58 -0.7
1,752,278 + OHPLBJKB_01663 0.71 -1.6
1,752,279 - OHPLBJKB_01663 0.71 -0.2
1,752,294 - OHPLBJKB_01663 0.74 -0.2
1,752,294 - OHPLBJKB_01663 0.74 -0.7
1,752,294 - OHPLBJKB_01663 0.74 -0.2
1,752,294 - OHPLBJKB_01663 0.74 -1.9
1,752,409 + -2.6
1,752,409 + -0.9
1,752,410 - -1.2
1,752,410 - -1.1
1,752,410 - -2.0
1,752,410 - -1.4
1,752,429 + +0.4
1,752,429 + +0.0
1,752,429 + +0.0
1,752,429 + +0.3
1,752,429 + +0.0
1,752,429 + +0.5
1,752,429 + +0.3
1,752,430 - -0.2
1,752,430 - -0.5
1,752,430 - +1.8
1,752,431 + -1.2
1,752,432 - +0.5
1,752,434 - +1.2
1,752,434 - +0.7
1,752,437 + -0.9
1,752,437 + +0.3
1,752,437 + +0.3
1,752,437 + +0.8
1,752,438 - +0.5
1,752,438 - +1.1
1,752,438 - +0.1
1,752,441 + +0.4
1,752,442 - +0.8
1,752,546 + +0.5
1,752,564 + +0.1
1,752,564 + +0.3
1,752,564 + +0.5
1,753,818 + +0.7
1,753,818 + -0.7
1,753,818 + -0.9
1,753,819 - +2.1
1,753,819 - +0.4
1,753,819 - +0.5
1,753,819 - -0.6
1,753,965 + +0.5
1,753,965 + +1.0
1,753,977 - -0.9
1,753,977 - -0.2
1,754,224 + +0.9
1,754,399 - OHPLBJKB_01665 0.52 -0.8
1,754,421 + OHPLBJKB_01665 0.60 +0.4
1,754,421 + OHPLBJKB_01665 0.60 -0.6
1,754,422 - OHPLBJKB_01665 0.60 -1.8
1,754,519 + +0.9
1,754,519 + -0.2
1,754,557 + -0.2
1,754,557 + +0.1
1,754,574 + +0.2
1,754,676 + -0.2
1,754,677 - +0.1
1,754,680 + +0.1

Or see this region's nucleotide sequence