Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01176

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01175 and OHPLBJKB_01176 are separated by 144 nucleotidesOHPLBJKB_01176 and OHPLBJKB_01177 are separated by 118 nucleotides OHPLBJKB_01175: OHPLBJKB_01175 - hypothetical protein, at 1,207,825 to 1,208,679 _01175 OHPLBJKB_01176: OHPLBJKB_01176 - Inositol-1-monophosphatase, at 1,208,824 to 1,209,627 _01176 OHPLBJKB_01177: OHPLBJKB_01177 - 'tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ' transl_table=11, at 1,209,746 to 1,210,486 _01177 Position (kb) 1208 1209 1210Strain fitness (log2 ratio) -2 -1 0 1 2at 1207.826 kb on + strandat 1207.826 kb on + strandat 1207.827 kb on - strandat 1207.930 kb on + strand, within OHPLBJKB_01175at 1207.930 kb on + strand, within OHPLBJKB_01175at 1207.963 kb on - strand, within OHPLBJKB_01175at 1207.964 kb on + strand, within OHPLBJKB_01175at 1207.964 kb on + strand, within OHPLBJKB_01175at 1207.965 kb on - strand, within OHPLBJKB_01175at 1207.965 kb on - strand, within OHPLBJKB_01175at 1207.965 kb on - strand, within OHPLBJKB_01175at 1208.020 kb on + strand, within OHPLBJKB_01175at 1208.021 kb on - strand, within OHPLBJKB_01175at 1208.021 kb on - strand, within OHPLBJKB_01175at 1208.051 kb on + strand, within OHPLBJKB_01175at 1208.066 kb on + strand, within OHPLBJKB_01175at 1208.066 kb on + strand, within OHPLBJKB_01175at 1208.067 kb on - strand, within OHPLBJKB_01175at 1208.067 kb on - strand, within OHPLBJKB_01175at 1208.080 kb on + strand, within OHPLBJKB_01175at 1208.080 kb on + strand, within OHPLBJKB_01175at 1208.080 kb on + strand, within OHPLBJKB_01175at 1208.081 kb on - strand, within OHPLBJKB_01175at 1208.081 kb on - strand, within OHPLBJKB_01175at 1208.084 kb on + strand, within OHPLBJKB_01175at 1208.084 kb on + strand, within OHPLBJKB_01175at 1208.123 kb on + strand, within OHPLBJKB_01175at 1208.124 kb on - strand, within OHPLBJKB_01175at 1208.124 kb on - strand, within OHPLBJKB_01175at 1208.158 kb on + strand, within OHPLBJKB_01175at 1208.158 kb on + strand, within OHPLBJKB_01175at 1208.158 kb on + strand, within OHPLBJKB_01175at 1208.158 kb on + strand, within OHPLBJKB_01175at 1208.158 kb on + strand, within OHPLBJKB_01175at 1208.158 kb on + strand, within OHPLBJKB_01175at 1208.158 kb on + strand, within OHPLBJKB_01175at 1208.158 kb on + strand, within OHPLBJKB_01175at 1208.159 kb on - strand, within OHPLBJKB_01175at 1208.211 kb on + strand, within OHPLBJKB_01175at 1208.245 kb on + strand, within OHPLBJKB_01175at 1208.245 kb on + strand, within OHPLBJKB_01175at 1208.286 kb on + strand, within OHPLBJKB_01175at 1208.352 kb on + strand, within OHPLBJKB_01175at 1208.352 kb on + strand, within OHPLBJKB_01175at 1208.368 kb on - strand, within OHPLBJKB_01175at 1208.368 kb on - strand, within OHPLBJKB_01175at 1208.368 kb on - strand, within OHPLBJKB_01175at 1208.409 kb on + strand, within OHPLBJKB_01175at 1208.409 kb on + strand, within OHPLBJKB_01175at 1208.410 kb on - strand, within OHPLBJKB_01175at 1208.576 kb on + strand, within OHPLBJKB_01175at 1208.576 kb on + strand, within OHPLBJKB_01175at 1208.576 kb on + strand, within OHPLBJKB_01175at 1208.576 kb on + strand, within OHPLBJKB_01175at 1208.577 kb on - strand, within OHPLBJKB_01175at 1208.577 kb on - strand, within OHPLBJKB_01175at 1208.577 kb on - strand, within OHPLBJKB_01175at 1208.605 kb on + strandat 1208.610 kb on - strandat 1208.638 kb on - strandat 1208.702 kb on - strandat 1208.702 kb on - strandat 1208.712 kb on - strandat 1208.749 kb on + strandat 1208.765 kb on + strandat 1208.766 kb on - strandat 1209.705 kb on + strandat 1209.757 kb on + strandat 1209.964 kb on + strand, within OHPLBJKB_01177at 1209.965 kb on - strand, within OHPLBJKB_01177at 1210.163 kb on + strand, within OHPLBJKB_01177at 1210.205 kb on + strand, within OHPLBJKB_01177at 1210.205 kb on + strand, within OHPLBJKB_01177at 1210.206 kb on - strand, within OHPLBJKB_01177at 1210.304 kb on + strand, within OHPLBJKB_01177at 1210.375 kb on + strand, within OHPLBJKB_01177at 1210.375 kb on + strand, within OHPLBJKB_01177at 1210.376 kb on - strand, within OHPLBJKB_01177at 1210.465 kb on + strandat 1210.472 kb on - strandat 1210.472 kb on - strandat 1210.520 kb on + strandat 1210.521 kb on - strandat 1210.536 kb on + strandat 1210.537 kb on - strandat 1210.547 kb on - strandat 1210.611 kb on + strandat 1210.621 kb on - strandat 1210.621 kb on - strandat 1210.627 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,207,826 + -0.4
1,207,826 + +0.3
1,207,827 - +0.6
1,207,930 + OHPLBJKB_01175 0.12 +0.0
1,207,930 + OHPLBJKB_01175 0.12 +0.1
1,207,963 - OHPLBJKB_01175 0.16 +0.8
1,207,964 + OHPLBJKB_01175 0.16 -0.0
1,207,964 + OHPLBJKB_01175 0.16 +1.2
1,207,965 - OHPLBJKB_01175 0.16 -0.3
1,207,965 - OHPLBJKB_01175 0.16 -2.3
1,207,965 - OHPLBJKB_01175 0.16 +1.0
1,208,020 + OHPLBJKB_01175 0.23 +1.1
1,208,021 - OHPLBJKB_01175 0.23 +0.4
1,208,021 - OHPLBJKB_01175 0.23 +1.4
1,208,051 + OHPLBJKB_01175 0.26 -0.7
1,208,066 + OHPLBJKB_01175 0.28 +0.9
1,208,066 + OHPLBJKB_01175 0.28 +0.4
1,208,067 - OHPLBJKB_01175 0.28 +0.0
1,208,067 - OHPLBJKB_01175 0.28 +0.6
1,208,080 + OHPLBJKB_01175 0.30 -0.9
1,208,080 + OHPLBJKB_01175 0.30 -1.2
1,208,080 + OHPLBJKB_01175 0.30 -0.7
1,208,081 - OHPLBJKB_01175 0.30 +1.0
1,208,081 - OHPLBJKB_01175 0.30 -0.4
1,208,084 + OHPLBJKB_01175 0.30 -2.1
1,208,084 + OHPLBJKB_01175 0.30 -0.4
1,208,123 + OHPLBJKB_01175 0.35 +1.3
1,208,124 - OHPLBJKB_01175 0.35 +0.7
1,208,124 - OHPLBJKB_01175 0.35 -0.6
1,208,158 + OHPLBJKB_01175 0.39 +0.4
1,208,158 + OHPLBJKB_01175 0.39 -2.0
1,208,158 + OHPLBJKB_01175 0.39 +0.8
1,208,158 + OHPLBJKB_01175 0.39 -0.4
1,208,158 + OHPLBJKB_01175 0.39 -0.4
1,208,158 + OHPLBJKB_01175 0.39 +0.4
1,208,158 + OHPLBJKB_01175 0.39 -0.3
1,208,158 + OHPLBJKB_01175 0.39 -0.2
1,208,159 - OHPLBJKB_01175 0.39 +1.1
1,208,211 + OHPLBJKB_01175 0.45 +0.5
1,208,245 + OHPLBJKB_01175 0.49 +0.3
1,208,245 + OHPLBJKB_01175 0.49 +0.3
1,208,286 + OHPLBJKB_01175 0.54 +0.7
1,208,352 + OHPLBJKB_01175 0.62 -0.0
1,208,352 + OHPLBJKB_01175 0.62 -1.5
1,208,368 - OHPLBJKB_01175 0.64 -0.5
1,208,368 - OHPLBJKB_01175 0.64 +0.2
1,208,368 - OHPLBJKB_01175 0.64 -0.4
1,208,409 + OHPLBJKB_01175 0.68 +0.7
1,208,409 + OHPLBJKB_01175 0.68 +1.5
1,208,410 - OHPLBJKB_01175 0.68 +0.8
1,208,576 + OHPLBJKB_01175 0.88 +1.1
1,208,576 + OHPLBJKB_01175 0.88 +1.1
1,208,576 + OHPLBJKB_01175 0.88 +1.8
1,208,576 + OHPLBJKB_01175 0.88 +0.7
1,208,577 - OHPLBJKB_01175 0.88 -0.7
1,208,577 - OHPLBJKB_01175 0.88 -0.1
1,208,577 - OHPLBJKB_01175 0.88 -0.6
1,208,605 + +1.0
1,208,610 - +0.6
1,208,638 - +1.2
1,208,702 - -0.6
1,208,702 - -1.2
1,208,712 - -1.3
1,208,749 + +0.3
1,208,765 + -0.0
1,208,766 - +0.3
1,209,705 + -1.9
1,209,757 + +0.0
1,209,964 + OHPLBJKB_01177 0.29 +0.3
1,209,965 - OHPLBJKB_01177 0.30 -0.9
1,210,163 + OHPLBJKB_01177 0.56 +0.2
1,210,205 + OHPLBJKB_01177 0.62 -0.6
1,210,205 + OHPLBJKB_01177 0.62 -0.0
1,210,206 - OHPLBJKB_01177 0.62 -1.0
1,210,304 + OHPLBJKB_01177 0.75 -0.0
1,210,375 + OHPLBJKB_01177 0.85 +0.7
1,210,375 + OHPLBJKB_01177 0.85 +0.3
1,210,376 - OHPLBJKB_01177 0.85 -0.5
1,210,465 + -0.0
1,210,472 - -0.4
1,210,472 - -1.9
1,210,520 + -0.8
1,210,521 - -2.7
1,210,536 + +0.1
1,210,537 - -0.5
1,210,547 - -1.0
1,210,611 + -1.5
1,210,621 - -1.2
1,210,621 - +0.2
1,210,627 + -1.0

Or see this region's nucleotide sequence