Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03157

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03155 and OHPLBJKB_03156 are separated by 173 nucleotidesOHPLBJKB_03156 and OHPLBJKB_03157 are separated by 2 nucleotidesOHPLBJKB_03157 and OHPLBJKB_03158 are separated by 117 nucleotidesOHPLBJKB_03158 and OHPLBJKB_03159 overlap by 4 nucleotides OHPLBJKB_03155: OHPLBJKB_03155 - Cysteine--tRNA ligase, at 3,287,121 to 3,288,506 _03155 OHPLBJKB_03156: OHPLBJKB_03156 - Peptidyl-prolyl cis-trans isomerase B, at 3,288,680 to 3,289,174 _03156 OHPLBJKB_03157: OHPLBJKB_03157 - UDP-2,3-diacylglucosamine hydrolase, at 3,289,177 to 3,289,899 _03157 OHPLBJKB_03158: OHPLBJKB_03158 - N5-carboxyaminoimidazole ribonucleotide mutase, at 3,290,017 to 3,290,526 _03158 OHPLBJKB_03159: OHPLBJKB_03159 - N5-carboxyaminoimidazole ribonucleotide synthase, at 3,290,523 to 3,291,590 _03159 Position (kb) 3289 3290Strain fitness (log2 ratio) -2 -1 0 1at 3288.548 kb on - strandat 3288.548 kb on - strandat 3288.548 kb on - strandat 3288.550 kb on - strandat 3288.550 kb on - strandat 3288.550 kb on - strandat 3288.550 kb on - strandat 3288.553 kb on - strandat 3288.553 kb on - strandat 3288.579 kb on + strandat 3288.579 kb on + strandat 3288.579 kb on + strandat 3288.580 kb on - strandat 3288.580 kb on - strandat 3288.580 kb on - strandat 3288.580 kb on - strandat 3288.613 kb on + strandat 3288.613 kb on + strandat 3288.613 kb on + strandat 3288.613 kb on + strandat 3288.615 kb on + strandat 3288.615 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strandat 3289.962 kb on + strandat 3289.963 kb on - strandat 3290.009 kb on + strandat 3290.009 kb on + strandat 3290.079 kb on + strand, within OHPLBJKB_03158at 3290.080 kb on - strand, within OHPLBJKB_03158at 3290.214 kb on + strand, within OHPLBJKB_03158at 3290.214 kb on + strand, within OHPLBJKB_03158at 3290.330 kb on - strand, within OHPLBJKB_03158at 3290.330 kb on - strand, within OHPLBJKB_03158at 3290.340 kb on - strand, within OHPLBJKB_03158at 3290.367 kb on + strand, within OHPLBJKB_03158at 3290.382 kb on + strand, within OHPLBJKB_03158at 3290.557 kb on + strandat 3290.565 kb on - strandat 3290.672 kb on - strand, within OHPLBJKB_03159at 3290.672 kb on - strand, within OHPLBJKB_03159at 3290.672 kb on - strand, within OHPLBJKB_03159at 3290.672 kb on - strand, within OHPLBJKB_03159at 3290.818 kb on + strand, within OHPLBJKB_03159at 3290.819 kb on - strand, within OHPLBJKB_03159at 3290.899 kb on - strand, within OHPLBJKB_03159

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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3,288,548 - -0.8
3,288,548 - +0.7
3,288,548 - +0.7
3,288,550 - -0.0
3,288,550 - +0.5
3,288,550 - -1.6
3,288,550 - +0.5
3,288,553 - +0.5
3,288,553 - -0.5
3,288,579 + +0.1
3,288,579 + +1.4
3,288,579 + -0.7
3,288,580 - -0.5
3,288,580 - +0.2
3,288,580 - -0.0
3,288,580 - +0.2
3,288,613 + +0.5
3,288,613 + +0.3
3,288,613 + -0.5
3,288,613 + +0.4
3,288,615 + +0.1
3,288,615 + +0.6
3,288,626 + +0.6
3,288,626 + +1.4
3,288,626 + -0.3
3,288,626 + -1.0
3,288,626 + -0.2
3,288,626 + -0.1
3,288,626 + -0.1
3,288,626 + +0.4
3,288,626 + -0.5
3,288,626 + +0.8
3,288,626 + -0.1
3,288,628 + +0.6
3,288,628 + +0.1
3,288,628 + +0.2
3,288,628 + -1.0
3,288,628 + -0.1
3,288,628 + -1.6
3,288,628 + +0.7
3,288,628 + +0.1
3,288,628 + +0.6
3,288,628 + +0.4
3,288,628 + -0.4
3,288,628 + -0.0
3,288,628 + -0.9
3,288,628 + -0.1
3,288,628 + -0.1
3,288,630 + -0.1
3,288,630 + +0.3
3,288,630 + +0.1
3,288,630 + +0.2
3,288,630 + -1.1
3,288,630 + +0.5
3,288,630 + -0.7
3,289,962 + +0.4
3,289,963 - -1.9
3,290,009 + +0.2
3,290,009 + -0.7
3,290,079 + OHPLBJKB_03158 0.12 -0.9
3,290,080 - OHPLBJKB_03158 0.12 +0.4
3,290,214 + OHPLBJKB_03158 0.39 -1.8
3,290,214 + OHPLBJKB_03158 0.39 +0.2
3,290,330 - OHPLBJKB_03158 0.61 -0.5
3,290,330 - OHPLBJKB_03158 0.61 -0.4
3,290,340 - OHPLBJKB_03158 0.63 +0.2
3,290,367 + OHPLBJKB_03158 0.69 -1.0
3,290,382 + OHPLBJKB_03158 0.72 -0.5
3,290,557 + -0.4
3,290,565 - -0.2
3,290,672 - OHPLBJKB_03159 0.14 -0.6
3,290,672 - OHPLBJKB_03159 0.14 -0.3
3,290,672 - OHPLBJKB_03159 0.14 -0.3
3,290,672 - OHPLBJKB_03159 0.14 -1.5
3,290,818 + OHPLBJKB_03159 0.28 -0.6
3,290,819 - OHPLBJKB_03159 0.28 -0.2
3,290,899 - OHPLBJKB_03159 0.35 -0.2

Or see this region's nucleotide sequence