Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03068

Experiment: lib only

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_03066 and OHPLBJKB_03067 are separated by 1 nucleotidesOHPLBJKB_03067 and OHPLBJKB_03068 are separated by 23 nucleotidesOHPLBJKB_03068 and OHPLBJKB_03069 are separated by 259 nucleotidesOHPLBJKB_03069 and OHPLBJKB_03070 are separated by 3 nucleotides OHPLBJKB_03066: OHPLBJKB_03066 - DNA polymerase III subunit delta, at 3,194,948 to 3,195,979 _03066 OHPLBJKB_03067: OHPLBJKB_03067 - Nicotinate-nucleotide adenylyltransferase, at 3,195,981 to 3,196,622 _03067 OHPLBJKB_03068: OHPLBJKB_03068 - Adenosylcobalamin/alpha-ribazole phosphatase, at 3,196,646 to 3,197,257 _03068 OHPLBJKB_03069: OHPLBJKB_03069 - Ribosomal silencing factor RsfS, at 3,197,517 to 3,197,834 _03069 OHPLBJKB_03070: OHPLBJKB_03070 - Ribosomal RNA large subunit methyltransferase H, at 3,197,838 to 3,198,305 _03070 Position (kb) 3196 3197 3198Strain fitness (log2 ratio) -1 0 1at 3195.927 kb on + strandat 3195.963 kb on + strandat 3195.963 kb on + strandat 3195.963 kb on + strandat 3195.967 kb on + strandat 3195.967 kb on + strandat 3195.967 kb on + strandat 3196.599 kb on - strandat 3196.623 kb on + strandat 3196.701 kb on - strandat 3196.762 kb on + strand, within OHPLBJKB_03068at 3196.770 kb on + strand, within OHPLBJKB_03068at 3196.770 kb on + strand, within OHPLBJKB_03068at 3196.771 kb on - strand, within OHPLBJKB_03068at 3196.771 kb on - strand, within OHPLBJKB_03068at 3196.798 kb on - strand, within OHPLBJKB_03068at 3196.798 kb on - strand, within OHPLBJKB_03068at 3196.952 kb on + strand, within OHPLBJKB_03068at 3196.952 kb on + strand, within OHPLBJKB_03068at 3197.074 kb on + strand, within OHPLBJKB_03068at 3197.075 kb on - strand, within OHPLBJKB_03068at 3197.112 kb on + strand, within OHPLBJKB_03068at 3197.112 kb on + strand, within OHPLBJKB_03068at 3197.125 kb on - strand, within OHPLBJKB_03068at 3197.146 kb on + strand, within OHPLBJKB_03068at 3197.146 kb on + strand, within OHPLBJKB_03068at 3197.146 kb on + strand, within OHPLBJKB_03068at 3197.146 kb on + strand, within OHPLBJKB_03068at 3197.146 kb on + strand, within OHPLBJKB_03068at 3197.261 kb on - strandat 3197.261 kb on - strandat 3197.261 kb on - strandat 3197.469 kb on + strandat 3197.471 kb on + strandat 3197.492 kb on + strandat 3197.660 kb on + strand, within OHPLBJKB_03069at 3197.660 kb on + strand, within OHPLBJKB_03069at 3197.660 kb on + strand, within OHPLBJKB_03069at 3197.660 kb on + strand, within OHPLBJKB_03069at 3197.927 kb on + strand, within OHPLBJKB_03070at 3198.136 kb on + strand, within OHPLBJKB_03070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lib only
remove
3,195,927 + +0.1
3,195,963 + +0.0
3,195,963 + +0.0
3,195,963 + -0.0
3,195,967 + -1.4
3,195,967 + +0.7
3,195,967 + +0.4
3,196,599 - +0.4
3,196,623 + +0.2
3,196,701 - +0.3
3,196,762 + OHPLBJKB_03068 0.19 -0.1
3,196,770 + OHPLBJKB_03068 0.20 -0.2
3,196,770 + OHPLBJKB_03068 0.20 +0.0
3,196,771 - OHPLBJKB_03068 0.20 +0.4
3,196,771 - OHPLBJKB_03068 0.20 -0.4
3,196,798 - OHPLBJKB_03068 0.25 -0.2
3,196,798 - OHPLBJKB_03068 0.25 -0.0
3,196,952 + OHPLBJKB_03068 0.50 -0.7
3,196,952 + OHPLBJKB_03068 0.50 -1.5
3,197,074 + OHPLBJKB_03068 0.70 -0.4
3,197,075 - OHPLBJKB_03068 0.70 +0.6
3,197,112 + OHPLBJKB_03068 0.76 +0.2
3,197,112 + OHPLBJKB_03068 0.76 -0.3
3,197,125 - OHPLBJKB_03068 0.78 -1.3
3,197,146 + OHPLBJKB_03068 0.82 -0.7
3,197,146 + OHPLBJKB_03068 0.82 -0.6
3,197,146 + OHPLBJKB_03068 0.82 -0.5
3,197,146 + OHPLBJKB_03068 0.82 -1.0
3,197,146 + OHPLBJKB_03068 0.82 -0.6
3,197,261 - +0.4
3,197,261 - +0.1
3,197,261 - -0.0
3,197,469 + -0.2
3,197,471 + -0.3
3,197,492 + +0.5
3,197,660 + OHPLBJKB_03069 0.45 -0.0
3,197,660 + OHPLBJKB_03069 0.45 +0.6
3,197,660 + OHPLBJKB_03069 0.45 -0.7
3,197,660 + OHPLBJKB_03069 0.45 +0.4
3,197,927 + OHPLBJKB_03070 0.19 -0.0
3,198,136 + OHPLBJKB_03070 0.64 -0.8

Or see this region's nucleotide sequence