Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02714

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02712 and OHPLBJKB_02713 are separated by 69 nucleotidesOHPLBJKB_02713 and OHPLBJKB_02714 are separated by 255 nucleotidesOHPLBJKB_02714 and OHPLBJKB_02715 overlap by 4 nucleotides OHPLBJKB_02712: OHPLBJKB_02712 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase, at 2,824,447 to 2,825,073 _02712 OHPLBJKB_02713: OHPLBJKB_02713 - Ribosome modulation factor, at 2,825,143 to 2,825,310 _02713 OHPLBJKB_02714: OHPLBJKB_02714 - hypothetical protein, at 2,825,566 to 2,826,129 _02714 OHPLBJKB_02715: OHPLBJKB_02715 - Paraquat-inducible protein B, at 2,826,126 to 2,827,766 _02715 Position (kb) 2825 2826 2827Strain fitness (log2 ratio) -1 0 1 2at 2825.075 kb on + strandat 2825.153 kb on - strandat 2825.153 kb on - strandat 2825.153 kb on - strandat 2825.326 kb on + strandat 2825.380 kb on - strandat 2825.436 kb on - strandat 2825.466 kb on - strandat 2825.504 kb on - strandat 2825.547 kb on + strandat 2825.564 kb on - strandat 2825.582 kb on - strandat 2825.582 kb on - strandat 2825.596 kb on - strandat 2825.648 kb on + strand, within OHPLBJKB_02714at 2825.918 kb on + strand, within OHPLBJKB_02714at 2825.918 kb on + strand, within OHPLBJKB_02714at 2825.963 kb on + strand, within OHPLBJKB_02714at 2825.992 kb on + strand, within OHPLBJKB_02714at 2826.046 kb on + strand, within OHPLBJKB_02714at 2826.056 kb on + strand, within OHPLBJKB_02714at 2826.056 kb on + strand, within OHPLBJKB_02714at 2826.057 kb on - strand, within OHPLBJKB_02714at 2826.177 kb on + strandat 2826.177 kb on + strandat 2826.255 kb on - strandat 2826.389 kb on + strand, within OHPLBJKB_02715at 2826.564 kb on - strand, within OHPLBJKB_02715at 2826.576 kb on - strand, within OHPLBJKB_02715at 2826.594 kb on - strand, within OHPLBJKB_02715at 2826.619 kb on + strand, within OHPLBJKB_02715at 2826.619 kb on + strand, within OHPLBJKB_02715at 2826.619 kb on + strand, within OHPLBJKB_02715at 2826.620 kb on - strand, within OHPLBJKB_02715at 2826.620 kb on - strand, within OHPLBJKB_02715at 2826.620 kb on - strand, within OHPLBJKB_02715at 2826.764 kb on + strand, within OHPLBJKB_02715at 2826.780 kb on - strand, within OHPLBJKB_02715at 2826.794 kb on + strand, within OHPLBJKB_02715at 2826.840 kb on - strand, within OHPLBJKB_02715at 2826.922 kb on + strand, within OHPLBJKB_02715

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,825,075 + -0.1
2,825,153 - -0.4
2,825,153 - -0.1
2,825,153 - +0.9
2,825,326 + -0.9
2,825,380 - +0.2
2,825,436 - +0.0
2,825,466 - -0.4
2,825,504 - -0.1
2,825,547 + -0.9
2,825,564 - -0.2
2,825,582 - +0.4
2,825,582 - -0.1
2,825,596 - +0.6
2,825,648 + OHPLBJKB_02714 0.15 -0.5
2,825,918 + OHPLBJKB_02714 0.62 -0.3
2,825,918 + OHPLBJKB_02714 0.62 +0.3
2,825,963 + OHPLBJKB_02714 0.70 +1.9
2,825,992 + OHPLBJKB_02714 0.76 -0.8
2,826,046 + OHPLBJKB_02714 0.85 -1.5
2,826,056 + OHPLBJKB_02714 0.87 +0.0
2,826,056 + OHPLBJKB_02714 0.87 -1.4
2,826,057 - OHPLBJKB_02714 0.87 +0.1
2,826,177 + -0.1
2,826,177 + -0.4
2,826,255 - +0.9
2,826,389 + OHPLBJKB_02715 0.16 +1.3
2,826,564 - OHPLBJKB_02715 0.27 -0.1
2,826,576 - OHPLBJKB_02715 0.27 +1.1
2,826,594 - OHPLBJKB_02715 0.29 -0.5
2,826,619 + OHPLBJKB_02715 0.30 -0.4
2,826,619 + OHPLBJKB_02715 0.30 +0.9
2,826,619 + OHPLBJKB_02715 0.30 -1.2
2,826,620 - OHPLBJKB_02715 0.30 -1.1
2,826,620 - OHPLBJKB_02715 0.30 +0.8
2,826,620 - OHPLBJKB_02715 0.30 -0.6
2,826,764 + OHPLBJKB_02715 0.39 -0.3
2,826,780 - OHPLBJKB_02715 0.40 -0.2
2,826,794 + OHPLBJKB_02715 0.41 +0.2
2,826,840 - OHPLBJKB_02715 0.44 -0.6
2,826,922 + OHPLBJKB_02715 0.49 +1.9

Or see this region's nucleotide sequence