Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01632

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01630 and OHPLBJKB_01631 are separated by 169 nucleotidesOHPLBJKB_01631 and OHPLBJKB_01632 are separated by 571 nucleotidesOHPLBJKB_01632 and OHPLBJKB_01633 are separated by 77 nucleotidesOHPLBJKB_01633 and OHPLBJKB_01634 are separated by 64 nucleotides OHPLBJKB_01630: OHPLBJKB_01630 - Multidrug resistance protein MdtA, at 1,711,122 to 1,712,369 _01630 OHPLBJKB_01631: OHPLBJKB_01631 - hypothetical protein, at 1,712,539 to 1,712,685 _01631 OHPLBJKB_01632: OHPLBJKB_01632 - hypothetical protein, at 1,713,257 to 1,713,916 _01632 OHPLBJKB_01633: OHPLBJKB_01633 - hypothetical protein, at 1,713,994 to 1,714,674 _01633 OHPLBJKB_01634: OHPLBJKB_01634 - hypothetical protein, at 1,714,739 to 1,715,200 _01634 Position (kb) 1713 1714Strain fitness (log2 ratio) -2 -1 0 1 2at 1712.335 kb on - strandat 1712.335 kb on - strandat 1712.355 kb on - strandat 1712.355 kb on - strandat 1712.355 kb on - strandat 1712.355 kb on - strandat 1712.355 kb on - strandat 1712.355 kb on - strandat 1712.355 kb on - strandat 1712.357 kb on - strandat 1712.357 kb on - strandat 1712.357 kb on - strandat 1712.360 kb on + strandat 1712.360 kb on + strandat 1712.360 kb on + strandat 1712.361 kb on - strandat 1712.361 kb on - strandat 1712.361 kb on - strandat 1712.413 kb on - strandat 1712.413 kb on - strandat 1712.413 kb on - strandat 1712.413 kb on - strandat 1712.413 kb on - strandat 1712.573 kb on - strand, within OHPLBJKB_01631at 1712.631 kb on + strand, within OHPLBJKB_01631at 1712.631 kb on + strand, within OHPLBJKB_01631at 1712.632 kb on - strand, within OHPLBJKB_01631at 1712.632 kb on - strand, within OHPLBJKB_01631at 1712.632 kb on - strand, within OHPLBJKB_01631at 1712.679 kb on + strandat 1712.685 kb on + strandat 1712.702 kb on + strandat 1712.702 kb on + strandat 1712.703 kb on - strandat 1712.703 kb on - strandat 1712.708 kb on + strandat 1712.789 kb on + strandat 1712.790 kb on - strandat 1712.812 kb on + strandat 1712.812 kb on + strandat 1712.813 kb on - strandat 1712.857 kb on + strandat 1712.961 kb on + strandat 1712.962 kb on - strandat 1712.965 kb on - strandat 1712.996 kb on + strandat 1713.006 kb on - strandat 1713.006 kb on - strandat 1713.006 kb on - strandat 1713.011 kb on + strandat 1713.019 kb on - strandat 1713.034 kb on + strandat 1713.034 kb on + strandat 1713.034 kb on + strandat 1713.034 kb on + strandat 1713.034 kb on + strandat 1713.035 kb on - strandat 1713.035 kb on - strandat 1713.035 kb on - strandat 1713.086 kb on + strandat 1713.087 kb on - strandat 1713.168 kb on - strandat 1713.168 kb on - strandat 1713.168 kb on - strandat 1713.256 kb on + strandat 1713.257 kb on - strandat 1713.350 kb on - strand, within OHPLBJKB_01632at 1713.364 kb on + strand, within OHPLBJKB_01632at 1713.364 kb on + strand, within OHPLBJKB_01632at 1713.364 kb on + strand, within OHPLBJKB_01632at 1713.429 kb on + strand, within OHPLBJKB_01632at 1713.535 kb on + strand, within OHPLBJKB_01632at 1713.610 kb on + strand, within OHPLBJKB_01632at 1713.617 kb on + strand, within OHPLBJKB_01632at 1713.618 kb on - strand, within OHPLBJKB_01632at 1713.709 kb on + strand, within OHPLBJKB_01632at 1713.709 kb on + strand, within OHPLBJKB_01632at 1713.804 kb on + strand, within OHPLBJKB_01632at 1713.804 kb on + strand, within OHPLBJKB_01632at 1713.824 kb on - strand, within OHPLBJKB_01632at 1713.931 kb on + strandat 1713.931 kb on + strandat 1713.932 kb on - strandat 1714.010 kb on + strandat 1714.114 kb on + strand, within OHPLBJKB_01633at 1714.114 kb on + strand, within OHPLBJKB_01633at 1714.114 kb on + strand, within OHPLBJKB_01633at 1714.114 kb on + strand, within OHPLBJKB_01633at 1714.114 kb on + strand, within OHPLBJKB_01633at 1714.114 kb on + strand, within OHPLBJKB_01633at 1714.114 kb on + strand, within OHPLBJKB_01633at 1714.114 kb on + strand, within OHPLBJKB_01633at 1714.115 kb on - strand, within OHPLBJKB_01633at 1714.115 kb on - strand, within OHPLBJKB_01633at 1714.115 kb on - strand, within OHPLBJKB_01633at 1714.115 kb on - strand, within OHPLBJKB_01633at 1714.115 kb on - strand, within OHPLBJKB_01633at 1714.115 kb on - strand, within OHPLBJKB_01633at 1714.115 kb on - strand, within OHPLBJKB_01633at 1714.115 kb on - strand, within OHPLBJKB_01633at 1714.115 kb on - strand, within OHPLBJKB_01633at 1714.115 kb on - strand, within OHPLBJKB_01633at 1714.116 kb on + strand, within OHPLBJKB_01633at 1714.116 kb on + strand, within OHPLBJKB_01633at 1714.116 kb on + strand, within OHPLBJKB_01633at 1714.116 kb on + strand, within OHPLBJKB_01633at 1714.116 kb on + strand, within OHPLBJKB_01633at 1714.116 kb on + strand, within OHPLBJKB_01633at 1714.116 kb on + strand, within OHPLBJKB_01633at 1714.116 kb on + strand, within OHPLBJKB_01633at 1714.117 kb on - strand, within OHPLBJKB_01633at 1714.117 kb on - strand, within OHPLBJKB_01633at 1714.117 kb on - strand, within OHPLBJKB_01633at 1714.117 kb on - strand, within OHPLBJKB_01633at 1714.117 kb on - strand, within OHPLBJKB_01633at 1714.117 kb on - strand, within OHPLBJKB_01633at 1714.173 kb on + strand, within OHPLBJKB_01633at 1714.173 kb on + strand, within OHPLBJKB_01633at 1714.173 kb on + strand, within OHPLBJKB_01633at 1714.174 kb on - strand, within OHPLBJKB_01633at 1714.174 kb on - strand, within OHPLBJKB_01633at 1714.174 kb on - strand, within OHPLBJKB_01633at 1714.178 kb on + strand, within OHPLBJKB_01633at 1714.178 kb on + strand, within OHPLBJKB_01633at 1714.178 kb on + strand, within OHPLBJKB_01633at 1714.319 kb on + strand, within OHPLBJKB_01633at 1714.320 kb on - strand, within OHPLBJKB_01633at 1714.369 kb on + strand, within OHPLBJKB_01633at 1714.370 kb on - strand, within OHPLBJKB_01633at 1714.465 kb on - strand, within OHPLBJKB_01633at 1714.491 kb on - strand, within OHPLBJKB_01633at 1714.494 kb on + strand, within OHPLBJKB_01633at 1714.495 kb on - strand, within OHPLBJKB_01633at 1714.641 kb on + strandat 1714.642 kb on - strandat 1714.842 kb on + strand, within OHPLBJKB_01634at 1714.896 kb on - strand, within OHPLBJKB_01634at 1714.903 kb on + strand, within OHPLBJKB_01634

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,712,335 - +0.2
1,712,335 - +0.3
1,712,355 - +0.1
1,712,355 - -0.5
1,712,355 - +0.1
1,712,355 - -0.7
1,712,355 - -0.5
1,712,355 - -0.2
1,712,355 - -0.5
1,712,357 - -1.7
1,712,357 - -0.3
1,712,357 - +0.6
1,712,360 + -0.2
1,712,360 + +1.5
1,712,360 + -0.7
1,712,361 - -0.9
1,712,361 - +0.3
1,712,361 - +0.4
1,712,413 - +1.0
1,712,413 - -0.9
1,712,413 - -0.2
1,712,413 - +0.5
1,712,413 - +1.0
1,712,573 - OHPLBJKB_01631 0.23 +1.7
1,712,631 + OHPLBJKB_01631 0.63 -0.8
1,712,631 + OHPLBJKB_01631 0.63 +0.4
1,712,632 - OHPLBJKB_01631 0.63 -0.8
1,712,632 - OHPLBJKB_01631 0.63 -0.5
1,712,632 - OHPLBJKB_01631 0.63 -0.5
1,712,679 + -0.4
1,712,685 + +0.7
1,712,702 + +0.5
1,712,702 + +0.6
1,712,703 - +0.5
1,712,703 - +0.4
1,712,708 + -0.9
1,712,789 + +0.2
1,712,790 - -0.1
1,712,812 + -2.4
1,712,812 + -0.7
1,712,813 - +0.8
1,712,857 + +0.5
1,712,961 + -0.9
1,712,962 - +1.0
1,712,965 - -0.7
1,712,996 + -0.0
1,713,006 - +0.7
1,713,006 - -1.2
1,713,006 - -0.4
1,713,011 + +0.2
1,713,019 - +0.2
1,713,034 + +0.1
1,713,034 + +0.2
1,713,034 + +0.4
1,713,034 + -0.2
1,713,034 + -0.5
1,713,035 - -1.0
1,713,035 - +0.9
1,713,035 - -0.1
1,713,086 + +0.0
1,713,087 - +0.3
1,713,168 - +0.7
1,713,168 - +0.3
1,713,168 - +1.0
1,713,256 + +0.2
1,713,257 - +1.3
1,713,350 - OHPLBJKB_01632 0.14 +0.2
1,713,364 + OHPLBJKB_01632 0.16 -0.5
1,713,364 + OHPLBJKB_01632 0.16 -1.1
1,713,364 + OHPLBJKB_01632 0.16 +0.8
1,713,429 + OHPLBJKB_01632 0.26 +0.5
1,713,535 + OHPLBJKB_01632 0.42 -0.2
1,713,610 + OHPLBJKB_01632 0.53 +0.3
1,713,617 + OHPLBJKB_01632 0.55 +0.1
1,713,618 - OHPLBJKB_01632 0.55 +0.4
1,713,709 + OHPLBJKB_01632 0.68 +0.0
1,713,709 + OHPLBJKB_01632 0.68 +0.3
1,713,804 + OHPLBJKB_01632 0.83 -0.2
1,713,804 + OHPLBJKB_01632 0.83 +0.7
1,713,824 - OHPLBJKB_01632 0.86 -0.3
1,713,931 + -0.0
1,713,931 + +0.2
1,713,932 - +0.2
1,714,010 + +0.5
1,714,114 + OHPLBJKB_01633 0.18 -1.4
1,714,114 + OHPLBJKB_01633 0.18 -1.0
1,714,114 + OHPLBJKB_01633 0.18 +0.8
1,714,114 + OHPLBJKB_01633 0.18 -0.4
1,714,114 + OHPLBJKB_01633 0.18 +0.1
1,714,114 + OHPLBJKB_01633 0.18 +0.4
1,714,114 + OHPLBJKB_01633 0.18 +0.5
1,714,114 + OHPLBJKB_01633 0.18 +0.4
1,714,115 - OHPLBJKB_01633 0.18 +1.2
1,714,115 - OHPLBJKB_01633 0.18 -0.5
1,714,115 - OHPLBJKB_01633 0.18 -0.4
1,714,115 - OHPLBJKB_01633 0.18 -0.2
1,714,115 - OHPLBJKB_01633 0.18 -1.0
1,714,115 - OHPLBJKB_01633 0.18 -0.2
1,714,115 - OHPLBJKB_01633 0.18 +0.5
1,714,115 - OHPLBJKB_01633 0.18 +0.2
1,714,115 - OHPLBJKB_01633 0.18 +0.0
1,714,115 - OHPLBJKB_01633 0.18 -0.3
1,714,116 + OHPLBJKB_01633 0.18 +0.8
1,714,116 + OHPLBJKB_01633 0.18 -1.0
1,714,116 + OHPLBJKB_01633 0.18 +0.2
1,714,116 + OHPLBJKB_01633 0.18 -0.9
1,714,116 + OHPLBJKB_01633 0.18 -0.0
1,714,116 + OHPLBJKB_01633 0.18 -0.2
1,714,116 + OHPLBJKB_01633 0.18 -0.6
1,714,116 + OHPLBJKB_01633 0.18 +0.2
1,714,117 - OHPLBJKB_01633 0.18 +2.0
1,714,117 - OHPLBJKB_01633 0.18 -0.1
1,714,117 - OHPLBJKB_01633 0.18 -0.5
1,714,117 - OHPLBJKB_01633 0.18 -1.0
1,714,117 - OHPLBJKB_01633 0.18 +0.4
1,714,117 - OHPLBJKB_01633 0.18 +0.5
1,714,173 + OHPLBJKB_01633 0.26 -1.5
1,714,173 + OHPLBJKB_01633 0.26 -0.0
1,714,173 + OHPLBJKB_01633 0.26 -1.0
1,714,174 - OHPLBJKB_01633 0.26 -0.3
1,714,174 - OHPLBJKB_01633 0.26 -0.6
1,714,174 - OHPLBJKB_01633 0.26 +0.4
1,714,178 + OHPLBJKB_01633 0.27 -0.4
1,714,178 + OHPLBJKB_01633 0.27 -0.3
1,714,178 + OHPLBJKB_01633 0.27 +1.0
1,714,319 + OHPLBJKB_01633 0.48 +0.2
1,714,320 - OHPLBJKB_01633 0.48 -0.2
1,714,369 + OHPLBJKB_01633 0.55 +1.5
1,714,370 - OHPLBJKB_01633 0.55 -2.4
1,714,465 - OHPLBJKB_01633 0.69 -1.1
1,714,491 - OHPLBJKB_01633 0.73 +0.2
1,714,494 + OHPLBJKB_01633 0.73 -0.4
1,714,495 - OHPLBJKB_01633 0.74 -0.4
1,714,641 + -0.2
1,714,642 - +0.3
1,714,842 + OHPLBJKB_01634 0.22 -0.6
1,714,896 - OHPLBJKB_01634 0.34 +0.3
1,714,903 + OHPLBJKB_01634 0.35 -0.9

Or see this region's nucleotide sequence